Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01057 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAAATATTCAAACAACAAAAAGATCTTCAACAACAACAACAAATAATTGGAACAGTTGATGTTCTTGCAGCTTCTACCTCTGCTTTCAAACTGTTTTTGCCACACAACATTAATGTAGGAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGTATGAAGGAAGAGAACAAAGTGTTGAGAAAAGCTGTGGAACAAACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTATCATTCAACAAAACAATAACCTCAACAATAAGGACTCTCACAACTTCCTATCATTCCATGAAAATGAGAACAAGAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCGGAGAAATGGCGAAGAAGAAGAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGGGAGAGTGAACTAGGGTTATCATTAGGGCTCCATACTAAGAACAATGATTTGGATCAAGAAGATAATCATAGGGAATTATTACAAGAAGAAAGAAGAGAAAAGAAGAAGGAAGATTCAATAATGTCCAACTTCTACTCAATCCAAAACAAGCCACAAAGACCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAATCTGCCACGATGAACGATGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCCTATTATCGTTGCACGGTTGCACCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGTTTAGAAGACATGTCAATTCTTATAACAACGTACGAAGGAACACATAATCATCCACTTCCTGTTGGAGCCACAGCCATGGCTTCCACAGCTTCTGCAGCAGCTTCCTTTATGCTCTTAGACTCCACTAATACTACTAATAATCTTTCTTCTCTTCCAAACCCTCAAAACCCTAATTTTCTAAACCCTCAAAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAACTAATTTCCTCCAAACTCAAAACCCTAATCAACCCTCAACCAATACATTTTACACTCCATTAATCCCCACATCTTCAACCTCAAACTTCCCCCAACCCTCCAATTGGATCAATACCAACCCTACTTCCTTTTACCATACCAACTTTCCCCTTCACGGCCGCTCCTTGAGACCACCCGACGATAATAAGCCACCGTTCACACCTGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCGGTTGCGGCTGCCATTTCTTCGCTCATTAACAAAGAGAATAACAACACAACAACGTCAAATTCTCCTATCGAAGATTCTTCTTCTTTCGGTCCAAGTAAGGATGGGAAAGGCAGCAGTGGCGGCGGTGATAGTGATGGCAGAAACAAGAAATGGGTTGTTGAGTCCCTCTCATCAAATGGTAATTAA 1473 40.87 MEIDLSLKIDHHKEEIFKQQKDLQQQQQIIGTVDVLAASTSAFKLFLPHNINVGGEISELQMEMDRMKEENKVLRKAVEQTMKDYYDLEMKIGIIQQNNNLNNKDSHNFLSFHENENKRHEEPTKQDLELGEMAKKKRRVRSPSKEDEMRESELGLSLGLHTKNNDLDQEDNHRELLQEERREKKKEDSIMSNFYSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNTTNNLSSLPNPQNPNFLNPQNPNILNSSSYSPTNFLQTQNPNQPSTNTFYTPLIPTSSTSNFPQPSNWINTNPTSFYHTNFPLHGRSLRPPDDNKPPFTPESVSAIASDPKFRVAVAAAISSLINKENNNTTTSNSPIEDSSSFGPSKDGKGSSGGGDSDGRNKKWVVESLSSNGN 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10905271 10911917 + ClCG05G009830.1 Cla05g01057 272547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01057 490 Pfam WRKY DNA -binding domain 231 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g01057 490 ProSiteProfiles WRKY domain profile. 225 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g01057 490 SMART WRKY_cls 230 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g01057 490 MobiDBLite consensus disorder prediction 131 154 - -
Cla05g01057 490 MobiDBLite consensus disorder prediction 131 171 - -
Cla05g01057 490 Coils Coil 50 84 - -
Cla05g01057 490 MobiDBLite consensus disorder prediction 395 418 - -
Cla05g01057 490 SUPERFAMILY WRKY DNA-binding domain 223 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g01057 490 Coils Coil 160 187 - -
Cla05g01057 490 MobiDBLite consensus disorder prediction 196 217 - -
Cla05g01057 490 MobiDBLite consensus disorder prediction 441 490 - -
Cla05g01057 490 MobiDBLite consensus disorder prediction 441 463 - -
Cla05g01057 490 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 11 466 IPR044810 GO:0003700
Cla05g01057 490 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 11 466 - -
Cla05g01057 490 Gene3D WRKY domain 215 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02125 Cla-Chr1:35508246 Cla05g01057 Cla-Chr5:10905271 3.30E-48 dispersed
Cla02g00199 Cla-Chr2:2110886 Cla05g01057 Cla-Chr5:10905271 5.90E-48 dispersed
Cla05g01057 Cla-Chr5:10905271 Cla06g01605 Cla-Chr6:29568866 1.26E-48 dispersed
Cla05g01057 Cla-Chr5:10905271 Cla01g01429 Cla-Chr1:28775137 1.93E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61069 PF03106 WRKY 2.00E-24 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01057 - - cmo:103496139 573.933