Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01062 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGGTAAGGAATATGCTCATCTGCTTGATTTTGTGTGTGCGAATCTTTTCTCAAAGTTCTTGAGAAGGCTTTTCACATTAACTTGTGCACTTCAAAGTTGTACTTGTTTTATGCATTCCATCAATTGCAAGTTTATGCAAGGCGCTGCAAAACTGCCGTTGATCAAGATTCAAAAAATTCTAAATGAACATGAAAGACCATCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACCAGCACAGAGTATATTATCTCGATGGACGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATCGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCGGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCTGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1485 45.66 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPGKEYAHLLDFVCANLFSKFLRRLFTLTCALQSCTCFMHSINCKFMQGAAKLPLIKIQKILNEHERPSLLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10955210 10958768 + ClCG05G009880.1 Cla05g01062 272552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01062 494 ProSitePatterns Tub family signature 1. 416 429 IPR018066 -
Cla05g01062 494 Gene3D - 49 101 - -
Cla05g01062 494 SUPERFAMILY Tubby C-terminal domain-like 103 147 IPR025659 -
Cla05g01062 494 ProSitePatterns Tub family signature 2. 479 494 IPR018066 -
Cla05g01062 494 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 212 494 - -
Cla05g01062 494 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 149 - -
Cla05g01062 494 Pfam F-box domain 54 100 IPR001810 GO:0005515
Cla05g01062 494 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Cla05g01062 494 SUPERFAMILY Tubby C-terminal domain-like 217 494 IPR025659 -
Cla05g01062 494 PANTHER TUBBY-RELATED 212 494 - -
Cla05g01062 494 PANTHER TUBBY-RELATED 1 149 - -
Cla05g01062 494 Gene3D Tubby Protein; Chain A 113 488 IPR025659 -
Cla05g01062 494 Pfam Tub family 216 489 IPR000007 -
Cla05g01062 494 Pfam Tub family 115 153 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 302 329 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 398 415 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 416 432 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 472 494 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 451 470 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 236 252 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 252 276 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01062 K19600 TUB, TULP; tubby and related proteins - csv:101216314 567.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01062 Cla-Chr5:10955210 Cla08g00355 Cla-Chr8:8941658 0 dispersed
Cla05g01062 Cla-Chr5:10955210 Cla05g01926 Cla-Chr5:31115517 2.60E-144 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00355 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 7.2e-178 620.5
Cla08g00713 . 1 452 TUB Transcription Factor Family AT1G76900 65.8 7.0e-165 577.4
Cla05g01062 . 1 494 TUB Transcription Factor Family AT1G76900 60.9 5.2e-160 561.2
Cla06g00505 CCT,ECH 13 386 TUB Transcription Factor Family AT1G76900 50.9 1.1e-114 410.6
Cla05g01062 . 240 494 TUB Transcription Factor Family AT1G25280 74.3 8.4e-102 367.1
Cla08g00355 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.9e-94 341.3
Cla08g00713 . 195 452 TUB Transcription Factor Family AT1G25280 70.0 2.1e-92 335.9
Cla06g00505 CCT,ECH 154 386 TUB Transcription Factor Family AT1G25280 53.9 1.4e-67 253.4
Cla05g00612 CCT,ECH 168 413 TUB Transcription Factor Family AT1G25280 51.3 2.3e-67 252.7
Cla05g01926 . 340 567 TUB Transcription Factor Family AT1G25280 53.8 1.5e-66 250.0
Cla01g01915 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 1.2e-63 240.4
Cla06g00505 CCT,ECH 98 386 TUB Transcription Factor Family AT5G18680 62.8 1.1e-99 360.1
Cla05g00612 CCT,ECH 98 413 TUB Transcription Factor Family AT5G18680 57.7 2.6e-91 332.4
Cla08g00355 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.9e-84 308.5
Cla08g00713 . 129 452 TUB Transcription Factor Family AT5G18680 50.3 7.4e-83 304.3
Cla01g01915 . 1 413 TUB Transcription Factor Family AT2G18280 61.3 1.7e-138 489.6
Cla05g01926 . 107 567 TUB Transcription Factor Family AT2G18280 52.3 1.5e-118 423.3
Cla08g00355 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.3e-116 416.0
Cla06g00505 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.5 3.1e-113 405.6
Cla05g00612 CCT,ECH 1 413 TUB Transcription Factor Family AT2G18280 51.0 8.6e-111 397.5
Cla06g00505 CCT,ECH 1 386 TUB Transcription Factor Family AT2G47900 68.5 4.6e-160 561.2
Cla05g00612 CCT,ECH 1 413 TUB Transcription Factor Family AT2G47900 64.4 1.2e-155 546.6
Cla08g00355 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.1e-132 470.3
Cla08g00713 . 1 452 TUB Transcription Factor Family AT2G47900 54.1 1.0e-127 453.8
Cla01g01915 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 2.9e-114 409.1
Cla07g00980 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 2.4e-100 362.8
Cla09g00311 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 9.0e-73 270.8
Cla08g00355 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.4e-147 519.6
Cla08g00713 . 65 452 TUB Transcription Factor Family AT1G43640 62.4 1.3e-137 486.5
Cla05g01062 . 66 494 TUB Transcription Factor Family AT1G43640 57.6 2.2e-137 485.7
Cla06g00505 CCT,ECH 49 386 TUB Transcription Factor Family AT1G43640 52.9 3.4e-106 382.1
Cla05g01926 . 140 567 TUB Transcription Factor Family AT1G47270 56.2 1.4e-126 449.9
Cla01g01915 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 3.1e-121 432.2
Cla08g00355 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 2.0e-112 402.9
Cla06g00505 CCT,ECH 1 386 TUB Transcription Factor Family AT1G47270 51.0 4.2e-110 395.2
Cla08g00713 . 48 452 TUB Transcription Factor Family AT1G47270 52.3 2.3e-108 389.4
Cla07g00980 . 50 383 TUB Transcription Factor Family AT1G53320 76.8 9.6e-152 533.5
Cla06g00505 CCT,ECH 98 386 TUB Transcription Factor Family AT3G06380 62.1 3.7e-95 345.1
Cla05g00612 CCT,ECH 98 413 TUB Transcription Factor Family AT3G06380 58.9 8.5e-92 334.0
Cla08g00713 . 132 452 TUB Transcription Factor Family AT3G06380 51.4 8.8e-81 297.4
Cla08g00355 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.4e-80 295.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61070 PF01167 Tub 6.40E-103 CL0395 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g01062 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0