Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01062 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGGTAAGGAATATGCTCATCTGCTTGATTTTGTGTGTGCGAATCTTTTCTCAAAGTTCTTGAGAAGGCTTTTCACATTAACTTGTGCACTTCAAAGTTGTACTTGTTTTATGCATTCCATCAATTGCAAGTTTATGCAAGGCGCTGCAAAACTGCCGTTGATCAAGATTCAAAAAATTCTAAATGAACATGAAAGACCATCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACCAGCACAGAGTATATTATCTCGATGGACGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATCGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCGGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCTGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1485 45.66 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPGKEYAHLLDFVCANLFSKFLRRLFTLTCALQSCTCFMHSINCKFMQGAAKLPLIKIQKILNEHERPSLLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10955210 10958768 + ClCG05G009880.1 Cla05g01062 272552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01062 494 ProSitePatterns Tub family signature 1. 416 429 IPR018066 -
Cla05g01062 494 Gene3D - 49 101 - -
Cla05g01062 494 SUPERFAMILY Tubby C-terminal domain-like 103 147 IPR025659 -
Cla05g01062 494 ProSitePatterns Tub family signature 2. 479 494 IPR018066 -
Cla05g01062 494 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 212 494 - -
Cla05g01062 494 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 149 - -
Cla05g01062 494 Pfam F-box domain 54 100 IPR001810 GO:0005515
Cla05g01062 494 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Cla05g01062 494 SUPERFAMILY Tubby C-terminal domain-like 217 494 IPR025659 -
Cla05g01062 494 PANTHER TUBBY-RELATED 212 494 - -
Cla05g01062 494 PANTHER TUBBY-RELATED 1 149 - -
Cla05g01062 494 Gene3D Tubby Protein; Chain A 113 488 IPR025659 -
Cla05g01062 494 Pfam Tub family 216 489 IPR000007 -
Cla05g01062 494 Pfam Tub family 115 153 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 302 329 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 398 415 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 416 432 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 472 494 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 451 470 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 236 252 IPR000007 -
Cla05g01062 494 PRINTS Tubby superfamily signature 252 276 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01062 Cla-Chr5:10955210 Cla08g00355 Cla-Chr8:8941658 0 dispersed
Cla05g01062 Cla-Chr5:10955210 Cla05g01926 Cla-Chr5:31115517 2.60E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61070 PF01167 Tub 6.40E-103 CL0395 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01062 K19600 - csv:101216314 567.0