Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01062 | ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGGTAAGGAATATGCTCATCTGCTTGATTTTGTGTGTGCGAATCTTTTCTCAAAGTTCTTGAGAAGGCTTTTCACATTAACTTGTGCACTTCAAAGTTGTACTTGTTTTATGCATTCCATCAATTGCAAGTTTATGCAAGGCGCTGCAAAACTGCCGTTGATCAAGATTCAAAAAATTCTAAATGAACATGAAAGACCATCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACCAGCACAGAGTATATTATCTCGATGGACGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATCGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCGGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCTGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA | 1485 | 45.66 | MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPGKEYAHLLDFVCANLFSKFLRRLFTLTCALQSCTCFMHSINCKFMQGAAKLPLIKIQKILNEHERPSLLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10955210 | 10958768 | + | ClCG05G009880.1 | Cla05g01062 | 272552 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01062 | 494 | ProSitePatterns | Tub family signature 1. | 416 | 429 | IPR018066 | - | |
Cla05g01062 | 494 | Gene3D | - | 49 | 101 | - | - | |
Cla05g01062 | 494 | SUPERFAMILY | Tubby C-terminal domain-like | 103 | 147 | IPR025659 | - | |
Cla05g01062 | 494 | ProSitePatterns | Tub family signature 2. | 479 | 494 | IPR018066 | - | |
Cla05g01062 | 494 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 212 | 494 | - | - | |
Cla05g01062 | 494 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 149 | - | - | |
Cla05g01062 | 494 | Pfam | F-box domain | 54 | 100 | IPR001810 | GO:0005515 | |
Cla05g01062 | 494 | SUPERFAMILY | F-box domain | 45 | 97 | IPR036047 | GO:0005515 | |
Cla05g01062 | 494 | SUPERFAMILY | Tubby C-terminal domain-like | 217 | 494 | IPR025659 | - | |
Cla05g01062 | 494 | PANTHER | TUBBY-RELATED | 212 | 494 | - | - | |
Cla05g01062 | 494 | PANTHER | TUBBY-RELATED | 1 | 149 | - | - | |
Cla05g01062 | 494 | Gene3D | Tubby Protein; Chain A | 113 | 488 | IPR025659 | - | |
Cla05g01062 | 494 | Pfam | Tub family | 216 | 489 | IPR000007 | - | |
Cla05g01062 | 494 | Pfam | Tub family | 115 | 153 | IPR000007 | - | |
Cla05g01062 | 494 | PRINTS | Tubby superfamily signature | 302 | 329 | IPR000007 | - | |
Cla05g01062 | 494 | PRINTS | Tubby superfamily signature | 398 | 415 | IPR000007 | - | |
Cla05g01062 | 494 | PRINTS | Tubby superfamily signature | 416 | 432 | IPR000007 | - | |
Cla05g01062 | 494 | PRINTS | Tubby superfamily signature | 472 | 494 | IPR000007 | - | |
Cla05g01062 | 494 | PRINTS | Tubby superfamily signature | 451 | 470 | IPR000007 | - | |
Cla05g01062 | 494 | PRINTS | Tubby superfamily signature | 236 | 252 | IPR000007 | - | |
Cla05g01062 | 494 | PRINTS | Tubby superfamily signature | 252 | 276 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01062 | Cla-Chr5:10955210 | Cla08g00355 | Cla-Chr8:8941658 | 0 | dispersed | |
Cla05g01062 | Cla-Chr5:10955210 | Cla05g01926 | Cla-Chr5:31115517 | 2.60E-144 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61070 | PF01167 | Tub | 6.40E-103 | CL0395 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01062 | K19600 | - | csv:101216314 | 567.0 |