Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01077 ATGGCCGCCACCGCATTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTCTTTCTTCAACTGCAGCTTCCCGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGCTCTAACCCCAATGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCAAATGCAACCGGTGTATTGGGAGTTTCTTCAGACTTGTCTAACATTTGCCTGCAATCTATATTTCAAACCATGGGATTGTATGGAGTTCCTAGAAATGCCACGGTTTTCTGTGGGGTTGGAACAAAAATTCCAGTGAACTACGCATGTAGAGGCCGCGAAACTGTCACACAGATGCTGGAATCTCCGAAATTTACAAACGTCAGTGAAAATTGCAAGTTGCCACTATCGGAGGAGAGTACTTGTAGGAAGTGTATTAATGCTGGGATTTTATATCTCCGCAATCTGATTGGAAGAGAAGATAATATAACGTTGAATACTTGTCGCGACGCTACATTTGTTGCACTTGCTAGCCAACTTGATCCTGCTTCAGTTGTTGATCTTGCAACCTGCTTCTTTGGAGTTCAAGGCCTTAACAAGCCTCCAGATAGGCTTGGTTTTTTCATTGCAAGGCTAGGTGTTCCAAGAGGGCACTATTTAACTGCTCATGATTTTTTTTCTGGTCAGACACAAGTTTCCGTAATCGTGGGTGCTCCACCCCCATCTTTCGCTACACCTGATATTTCCCCAAGTCCATCAGCTGCTGAGAGTCCGGGGCCACTGACGCTAGGTGTTTCTGGTGATAAAAGTCATGAACATCATTCCTACCATCTAACATTAGTGGCGGGTATTGGCATTGCGGTGACTGTCGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGCTGATTCGAAGGAAAAGCAGAGAGCTAAAGGATTCTGATAAGACGGATGTTAACTCTTCAAAATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCAATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGTCAAGGAGGATATGGAACTGTTTATAAAGCTCAATTCAGTGATGACTTAGTGGTAGCTGTTAAGAGGATGAACAAATTCTCCGAGCAAGGGGATGATGAATTTGGCAGAGAAATAGAGCTGCTTGCGAGATTACATCACCGACATCTTGTTGCTTTAAGGGGCTTTTGTGTTGAAAAGCATGAACGGTTTCTTGTATACGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCGGACAAGAATCCAAATTGCCATTGATGTCGCCAATGCTCTGGAGTATCTTCACTATTATTGTGATCCCCCACTGTGCCATAGAGACATTAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTTGCTAAGGTTGCTGATTTTGGCCTTGCACACGCTTCAAAGGGTGGTTCTATTTTCTTTGAACCTGTAAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCCGAGTATGTTATCACACAAGAACTTACTGAGAAAAGTGATATATACAGCTATGGCGTGCTACTTCTGGAAATAGTTACTGGCAGACGTGCGATACAAGACGGGAAGAATTTGGTTGAATGGTCCCTGGGGTACATGATTTCAGATTCAAGGATATCCGAACTAGTAGATCCAAGTCTCAAGAGTTCTTTTAACTTGGACCAACTTCACACGGTTCTGTCAATTGTGAGATGGTGCACCGAGGGAGAAGGCAGGGCAAGGCCTTCAATTAAACAGGTGCTTCGACTATTGTACGAGAGCTCGGACCCAATGCATCAAGGGCTCGTAGAGGCTGTGGATGATGAAGAATATGGAGGTATTGAAGGGAGACAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGCAATTTTCCACAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCACCACAGTCTCCTCCCAATAATTTGTCTGTTTCAGACCAATTGTTTTAG 2148 43.39 MAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRYINAFVAVSVAQLANATGVLGVSSDLSNICLQSIFQTMGLYGVPRNATVFCGVGTKIPVNYACRGRETVTQMLESPKFTNVSENCKLPLSEESTCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDPASVVDLATCFFGVQGLNKPPDRLGFFIARLGVPRGHYLTAHDFFSGQTQVSVIVGAPPPSFATPDISPSPSAAESPGPLTLGVSGDKSHEHHSYHLTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSDKTDVNSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSDDLVVAVKRMNKFSEQGDDEFGREIELLARLHHRHLVALRGFCVEKHERFLVYEYMANGSLKDHLHAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSIFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLGYMISDSRISELVDPSLKSSFNLDQLHTVLSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLVEAVDDEEYGGIEGRQSMSKRKMHKSDAIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNNLSVSDQLF 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11141462 11149774 - ClCG05G010050.2 Cla05g01077 272567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01077 715 Pfam Protein kinase domain 366 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01077 715 Pfam SPARK 28 160 IPR043891 -
Cla05g01077 715 Gene3D Transferase(Phosphotransferase) domain 1 438 649 - -
Cla05g01077 715 PANTHER OS01G0750732 PROTEIN 236 709 - -
Cla05g01077 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Cla05g01077 715 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Cla05g01077 715 SUPERFAMILY Protein kinase-like (PK-like) 343 631 IPR011009 -
Cla05g01077 715 PANTHER BNAC06G02630D PROTEIN 236 709 - -
Cla05g01077 715 ProSiteProfiles Protein kinase domain profile. 362 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01077 715 Gene3D Phosphorylase Kinase; domain 1 325 437 - -
Cla05g01077 715 CDD STKc_IRAK 368 630 - -
Cla05g01077 715 PANTHER OS01G0750732 PROTEIN 8 213 - -
Cla05g01077 715 MobiDBLite consensus disorder prediction 696 715 - -
Cla05g01077 715 SMART serkin_6 362 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01077 715 PANTHER BNAC06G02630D PROTEIN 8 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00115 Cla-Chr1:1015685 Cla05g01077 Cla-Chr5:11141462 8.46E-56 dispersed
Cla02g02181 Cla-Chr2:36930009 Cla05g01077 Cla-Chr5:11141462 5.45E-62 dispersed
Cla05g01077 Cla-Chr5:11141462 Cla01g02462 Cla-Chr1:38303940 1.08E-76 dispersed
Cla11g00469 Cla-Chr11:5349387 Cla05g01077 Cla-Chr5:11141462 1.05E-48 dispersed
Cla05g01077 Cla-Chr5:11141462 Cla03g00002 Cla-Chr3:56181 2.58E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80563 PF00069 Pkinase 3.80E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01077 - - csv:101219079 1214.91