Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01082 ATGCCTGGGACTGGAAGTGTTGCTGTTCAACCTTTGGATTTGAGCGTACACATTCCATATCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGTGATCCTGTCACCGTCAGCACCGGTCAGACCTACGACCGTTCAAGTATAGAGTCATGGGTAGCCACCGGAAACACCACTTGTCCGGTTACTAGGGCTCCACTCACCGACTTCACGCTCATCCCTAACCATACACTGCGACGCTTAATCCAGGACTGGTGCGTTGCCAATCGGTCTTACGGGGTTGAGCGGATTCCGACTCCGAAGCAACCGGCGGAACCGTCTTTGGTTAGGTCTTTGCTTAGCCAAGCTTCGTCCAGATCGAGTGGTTCGAGTTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAACGCTCGTGAAATTCTTCTGGATGTTGTTTTTTCGAATTTGGATTCGGATTCGGATTCGGATTCGTTTTCACCTGATTTGAGCCGCGAATCGCTTGCGCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGCGTTCTTGTTGCGTCTGATCCGCAACGGATTGGTTATCTGTCACATCTTCTATTTGATTCTTCGATTGAAGTCCGAATCAATGCTGCGGCGTTGATTGAAATTGTAATTGCCGGAACTCGAGCGTCGGAGCTTCGAAGCCAAATTTGTGGAATCGATGAATTGTTTGAAGGCGTTGTCGAAATCCTCAGAGATCCAACAGCGTATCCACGAGCACTCAAGGTCGGGGTTAAGGCTTTATTTGCTCTCTGTTTGGTGAAACAAACCAGGCACAAGGCAGTTTCCGCCGGCGCCGCCGAGATTATCATTGATCGATTTCCTGATTTGGAGAAGTATGATGCTGAGCGAGCCCTAGCTACGATTGAACTCATTTGCAGAATACCAACCGGTTGCGATGCGTTTGCAGCTCACGCGCTCACCGTTCCGCTTTTGGTGAAAGTCATTTTGAAGATCTCGGACAGAGCGACGGAGTCAGCCGTCGGAGCTCTGGTGTCGCTGTGTTCGGCATCGGAGGAGAATCGGCGGGAGGCGGTGGCGGCGGGGATTTTGACACAGTTGTTATTGCTGGTGCAAAGTGATTGTACGGAGCGAGTTAAACGGAAATCGCAGGTGTTGCTGAAGCTTCTTCGAGATTCATGGCCGCAGGAATCCGTTGGAAATTCCGACGATTATGCTTGCAGTGAAATTGTGGTACCCTTTTGTTAA 1284 50.08 MPGTGSVAVQPLDLSVHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPAEPSLVRSLLSQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSDSDSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRSQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPFC 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11199364 11200647 + ClCG05G010100.1 Cla05g01082 272572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01082 427 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842|GO:0016567
Cla05g01082 427 SUPERFAMILY ARM repeat 107 402 IPR016024 -
Cla05g01082 427 CDD RING-Ubox_PUB 22 63 IPR045210 -
Cla05g01082 427 Pfam U-box domain 18 89 IPR003613 GO:0004842|GO:0016567
Cla05g01082 427 Gene3D - 95 409 IPR011989 -
Cla05g01082 427 SMART Ubox_2 21 84 IPR003613 GO:0004842|GO:0016567
Cla05g01082 427 PANTHER WDSAM1 PROTEIN 9 423 IPR045185 GO:0061630
Cla05g01082 427 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 423 - -
Cla05g01082 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Cla05g01082 427 SUPERFAMILY RING/U-box 15 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00045 Cla-Chr2:495255 Cla05g01082 Cla-Chr5:11199364 8.37E-44 dispersed
Cla05g01082 Cla-Chr5:11199364 Cla05g01204 Cla-Chr5:13390525 4.40E-69 dispersed
Cla08g01635 Cla-Chr8:28938900 Cla05g01082 Cla-Chr5:11199364 2.58E-41 dispersed
Cla11g01487 Cla-Chr11:28521662 Cla05g01082 Cla-Chr5:11199364 1.04E-21 dispersed
Cla05g01082 Cla-Chr5:11199364 Cla10g01740 Cla-Chr10:33280755 6.18E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01082 - - csv:101219319 751.125