Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01087 ATGGGCCCACAGTGCATTGCGATGGACGTTTCATCTGCCCTCCAAACCCTCGCGTTTTTTTGTTCCCGTCTCTTCCTCCGTCGCTCTCTACGTCACGCGCCGCCCCGTTTTCCGGCGGCTGATCATTTCTCCACTCGGATCTTTCCGATTATCTATCCGGGTTTGTTTATGAATAACAAAATTAGGAGAGGGAATATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGGTCAGTTTCCCTTTACTTTTCTTCAATTCCCCCTGTTTTTTAATGTACTTGTTTCATTTCTTGTTCGGCTGATTGCTTGGACTGAATCTCAGAAAGTTAAGCTTGTAGCAATCCAATGTAAGTCGGGGAAATTAGTGATACCAAAGTGGCTAGCTGTTATTAAAGGCCGGGTGGTTGCTTTCGGCGTCTCTATAAGACATCTAAACGGCCAGCCTATTTGTTTTATTTTATGGAGAATTGGAATATGGGCCTGTTTGGTGGACTGGGAGATGCTGAGGGTCATTTTATTGCATTATGATGTTTGGTCTTCACTCTTCAGGATACAAATGTTTCACTACTGGGCAGATCTGGATATGTTACATTGTGATGCATATTCAATTTTGCTTAATTTTAGGAACCTTTATGTAAATTCTTCAACAGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCATCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCGTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGACTCTGCTCAGAAAGCAATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACAACTACTGAAGAGGATTTGAACAAGGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATGCGCTCAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCGGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATCCGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATACCCTCCTGGTGGTCCAGGTATTGGACAGCAGTTGTTTTACGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGTAACTACTTTCACCAGACCTTTCTTTATGAACATTATAATTTCATGTTATCTTTCTTTTGTTGCACCAAATTGGTGGTCAATTGTATTGATTTTCTTATTTACTCATTCGTCCATGGCTCAATCCTTCTATCTTGCCTTCTGGAAGGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGTCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTTGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTAGTGGAACAGTTGGAGCCGGACAATGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAGGCTTTGAAGGCCAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCTGCAGCTCAGCAGCAGCAAGCTGGCAATGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACCGAGAACCTCGTGTCATGA 2724 44.9 MGPQCIAMDVSSALQTLAFFCSRLFLRRSLRHAPPRFPAADHFSTRIFPIIYPGLFMNNKIRRGNMAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDGQFPFTFLQFPLFFNVLVSFLVRLIAWTESQKVKLVAIQCKSGKLVIPKWLAVIKGRVVAFGVSIRHLNGQPICFILWRIGIWACLVDWEMLRVILLHYDVWSSLFRIQMFHYWADLDMLHCDAYSILLNFRNLYVNSSTAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQVTTFTRPFFMNIIISCYLSFVAPNWWSIVLIFLFTHSSMAQSFYLAFWKGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11241152 11246965 - ClCG05G010160.2 Cla05g01087 272577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01087 907 SUPERFAMILY PABC (PABP) domain 749 899 IPR036053 GO:0003723
Cla05g01087 907 SUPERFAMILY RNA-binding domain, RBD 282 403 IPR035979 GO:0003676
Cla05g01087 907 Pfam Poly-adenylate binding protein, unique domain 814 878 IPR002004 GO:0003723
Cla05g01087 907 CDD RRM2_I_PABPs 320 396 IPR045305 -
Cla05g01087 907 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 147 IPR000504 GO:0003723
Cla05g01087 907 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 415 483 IPR000504 GO:0003723
Cla05g01087 907 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 392 IPR000504 GO:0003723
Cla05g01087 907 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 518 586 IPR000504 GO:0003723
Cla05g01087 907 PANTHER POLYADENYLATE-BINDING PROTEIN 697 888 - -
Cla05g01087 907 SUPERFAMILY RNA-binding domain, RBD 59 148 IPR035979 GO:0003676
Cla05g01087 907 PANTHER RNA BINDING PROTEIN 83 151 - -
Cla05g01087 907 PANTHER RNA BINDING PROTEIN 284 649 - -
Cla05g01087 907 PANTHER POLYADENYLATE-BINDING PROTEIN 83 151 - -
Cla05g01087 907 PANTHER POLYADENYLATE-BINDING PROTEIN 284 649 - -
Cla05g01087 907 SMART rrm2_1 414 486 IPR003954 GO:0003676
Cla05g01087 907 SMART rrm2_1 517 589 IPR003954 GO:0003676
Cla05g01087 907 SMART rrm2_1 323 395 IPR003954 GO:0003676
Cla05g01087 907 Gene3D - 56 150 IPR012677 -
Cla05g01087 907 PANTHER RNA BINDING PROTEIN 697 888 - -
Cla05g01087 907 CDD RRM4_I_PABPs 515 593 - -
Cla05g01087 907 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 413 490 IPR000504 GO:0003723
Cla05g01087 907 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 516 593 IPR000504 GO:0003723
Cla05g01087 907 Gene3D - 398 498 IPR012677 -
Cla05g01087 907 SMART poly_2 818 881 IPR002004 GO:0003723
Cla05g01087 907 SUPERFAMILY RNA-binding domain, RBD 413 596 IPR035979 GO:0003676
Cla05g01087 907 SMART rrm1_1 95 167 IPR000504 GO:0003723
Cla05g01087 907 SMART rrm1_1 323 395 IPR000504 GO:0003723
Cla05g01087 907 SMART rrm1_1 517 589 IPR000504 GO:0003723
Cla05g01087 907 SMART rrm1_1 414 486 IPR000504 GO:0003723
Cla05g01087 907 Gene3D - 321 395 IPR012677 -
Cla05g01087 907 Gene3D - 802 883 - -
Cla05g01087 907 CDD RRM1_I_PABPs 95 161 - -
Cla05g01087 907 Gene3D - 499 602 IPR012677 -
Cla05g01087 907 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 394 IPR000504 GO:0003723
Cla05g01087 907 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 806 883 IPR002004 GO:0003723
Cla05g01087 907 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 147 IPR000504 GO:0003723
Cla05g01087 907 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 282 879 IPR006515 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01087 Cla-Chr5:11241152 Cla08g00733 Cla-Chr8:19630576 4.43E-17 dispersed
Cla01g00094 Cla-Chr1:823790 Cla05g01087 Cla-Chr5:11241152 8.22E-11 transposed
Cla08g00119 Cla-Chr8:2428717 Cla05g01087 Cla-Chr5:11241152 8.58E-06 transposed
Cla02g00613 Cla-Chr2:6731074 Cla05g01087 Cla-Chr5:11241152 1.98E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01087 K13126 - csv:101219802 1023.85