Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01087 | ATGGGCCCACAGTGCATTGCGATGGACGTTTCATCTGCCCTCCAAACCCTCGCGTTTTTTTGTTCCCGTCTCTTCCTCCGTCGCTCTCTACGTCACGCGCCGCCCCGTTTTCCGGCGGCTGATCATTTCTCCACTCGGATCTTTCCGATTATCTATCCGGGTTTGTTTATGAATAACAAAATTAGGAGAGGGAATATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGGTCAGTTTCCCTTTACTTTTCTTCAATTCCCCCTGTTTTTTAATGTACTTGTTTCATTTCTTGTTCGGCTGATTGCTTGGACTGAATCTCAGAAAGTTAAGCTTGTAGCAATCCAATGTAAGTCGGGGAAATTAGTGATACCAAAGTGGCTAGCTGTTATTAAAGGCCGGGTGGTTGCTTTCGGCGTCTCTATAAGACATCTAAACGGCCAGCCTATTTGTTTTATTTTATGGAGAATTGGAATATGGGCCTGTTTGGTGGACTGGGAGATGCTGAGGGTCATTTTATTGCATTATGATGTTTGGTCTTCACTCTTCAGGATACAAATGTTTCACTACTGGGCAGATCTGGATATGTTACATTGTGATGCATATTCAATTTTGCTTAATTTTAGGAACCTTTATGTAAATTCTTCAACAGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCATCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCGTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGACTCTGCTCAGAAAGCAATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACAACTACTGAAGAGGATTTGAACAAGGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATGCGCTCAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCGGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATCCGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATACCCTCCTGGTGGTCCAGGTATTGGACAGCAGTTGTTTTACGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGTAACTACTTTCACCAGACCTTTCTTTATGAACATTATAATTTCATGTTATCTTTCTTTTGTTGCACCAAATTGGTGGTCAATTGTATTGATTTTCTTATTTACTCATTCGTCCATGGCTCAATCCTTCTATCTTGCCTTCTGGAAGGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGTCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTTGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTAGTGGAACAGTTGGAGCCGGACAATGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAGGCTTTGAAGGCCAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCTGCAGCTCAGCAGCAGCAAGCTGGCAATGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACCGAGAACCTCGTGTCATGA | 2724 | 44.9 | MGPQCIAMDVSSALQTLAFFCSRLFLRRSLRHAPPRFPAADHFSTRIFPIIYPGLFMNNKIRRGNMAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDGQFPFTFLQFPLFFNVLVSFLVRLIAWTESQKVKLVAIQCKSGKLVIPKWLAVIKGRVVAFGVSIRHLNGQPICFILWRIGIWACLVDWEMLRVILLHYDVWSSLFRIQMFHYWADLDMLHCDAYSILLNFRNLYVNSSTAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQVTTFTRPFFMNIIISCYLSFVAPNWWSIVLIFLFTHSSMAQSFYLAFWKGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS | 907 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11241152 | 11246965 | - | ClCG05G010160.2 | Cla05g01087 | 272577 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01087 | 907 | SUPERFAMILY | PABC (PABP) domain | 749 | 899 | IPR036053 | GO:0003723 | |
Cla05g01087 | 907 | SUPERFAMILY | RNA-binding domain, RBD | 282 | 403 | IPR035979 | GO:0003676 | |
Cla05g01087 | 907 | Pfam | Poly-adenylate binding protein, unique domain | 814 | 878 | IPR002004 | GO:0003723 | |
Cla05g01087 | 907 | CDD | RRM2_I_PABPs | 320 | 396 | IPR045305 | - | |
Cla05g01087 | 907 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 96 | 147 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 415 | 483 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 324 | 392 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 518 | 586 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 697 | 888 | - | - | |
Cla05g01087 | 907 | SUPERFAMILY | RNA-binding domain, RBD | 59 | 148 | IPR035979 | GO:0003676 | |
Cla05g01087 | 907 | PANTHER | RNA BINDING PROTEIN | 83 | 151 | - | - | |
Cla05g01087 | 907 | PANTHER | RNA BINDING PROTEIN | 284 | 649 | - | - | |
Cla05g01087 | 907 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 83 | 151 | - | - | |
Cla05g01087 | 907 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 284 | 649 | - | - | |
Cla05g01087 | 907 | SMART | rrm2_1 | 414 | 486 | IPR003954 | GO:0003676 | |
Cla05g01087 | 907 | SMART | rrm2_1 | 517 | 589 | IPR003954 | GO:0003676 | |
Cla05g01087 | 907 | SMART | rrm2_1 | 323 | 395 | IPR003954 | GO:0003676 | |
Cla05g01087 | 907 | Gene3D | - | 56 | 150 | IPR012677 | - | |
Cla05g01087 | 907 | PANTHER | RNA BINDING PROTEIN | 697 | 888 | - | - | |
Cla05g01087 | 907 | CDD | RRM4_I_PABPs | 515 | 593 | - | - | |
Cla05g01087 | 907 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 413 | 490 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 516 | 593 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | Gene3D | - | 398 | 498 | IPR012677 | - | |
Cla05g01087 | 907 | SMART | poly_2 | 818 | 881 | IPR002004 | GO:0003723 | |
Cla05g01087 | 907 | SUPERFAMILY | RNA-binding domain, RBD | 413 | 596 | IPR035979 | GO:0003676 | |
Cla05g01087 | 907 | SMART | rrm1_1 | 95 | 167 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | SMART | rrm1_1 | 323 | 395 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | SMART | rrm1_1 | 517 | 589 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | SMART | rrm1_1 | 414 | 486 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | Gene3D | - | 321 | 395 | IPR012677 | - | |
Cla05g01087 | 907 | Gene3D | - | 802 | 883 | - | - | |
Cla05g01087 | 907 | CDD | RRM1_I_PABPs | 95 | 161 | - | - | |
Cla05g01087 | 907 | Gene3D | - | 499 | 602 | IPR012677 | - | |
Cla05g01087 | 907 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 322 | 394 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 806 | 883 | IPR002004 | GO:0003723 | |
Cla05g01087 | 907 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 94 | 147 | IPR000504 | GO:0003723 | |
Cla05g01087 | 907 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 282 | 879 | IPR006515 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01087 | Cla-Chr5:11241152 | Cla08g00733 | Cla-Chr8:19630576 | 4.43E-17 | dispersed | |
Cla01g00094 | Cla-Chr1:823790 | Cla05g01087 | Cla-Chr5:11241152 | 8.22E-11 | transposed | |
Cla08g00119 | Cla-Chr8:2428717 | Cla05g01087 | Cla-Chr5:11241152 | 8.58E-06 | transposed | |
Cla02g00613 | Cla-Chr2:6731074 | Cla05g01087 | Cla-Chr5:11241152 | 1.98E-73 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01087 | K13126 | - | csv:101219802 | 1023.85 |