Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01093 ATGGCAATGCATCGGTACGTACAAGCTGATGATGATGCCCAAACCCATTTGTTTCCGCTCGATTCTTTGTTTTGTGAAGAGGAGAAATGGGAGGAGGAGGAGGAGCAGGAGGAAGATGTAGCTGAGTTAGAACAAACCCATTTCTCTTCTTTGGGATTTTTGGACGAACATCTCTCCGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCACCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTGCTCGTTCTTCAGCTGTGGACTGGATGCTCAAAGTTCAATCCCATTATGGGTTTTCAACTCTCACTGCCATTTTGGCTGTTGCTTATTTTGACAGATTCCTCCTGAGCTTCCATTTTAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATCTTCACTTGGAGTTTTTCAGGCGTTCTGAGTATCTTCTCCTCTCTCTACTTTCAGATTCAAGATTTGTGGGTTATCTCCCATCTGTCTTGGCAACTGCAACAATGATGGAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAGGTGCAATGCTGTTACAATCTTGTTGTGGAGCATTCAAAGGCCTATTCCAGTGGCTTTTATCATCCCATCAACTCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCTTGGGCATTTAGAGCAACATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAATCTGAAGAGTCAAAGATGAAATTTCATTCTCTTAACAGGGCCTTTCTGGACATTGTTGGCAGCCCTTCTTGA 1134 44.09 MAMHRYVQADDDAQTHLFPLDSLFCEEEKWEEEEEQEEDVAELEQTHFSSLGFLDEHLSGEDERLLSMLSKETEQLKQSNLHLEALLMDPSISAARSSAVDWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNLHLEFFRRSEYLLLSLLSDSRFVGYLPSVLATATMMEVIDQIEPHKTLEHQDKLLGVLKMNKEKVQCCYNLVVEHSKAYSSGFYHPINSHKRKHEQQAPDSPSGVIDAGFSSDSSNDSWAFRATSVCSSPEPSFKKSKSEESKMKFHSLNRAFLDIVGSPS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11320100 11321995 + ClCG05G010220.1 Cla05g01093 272583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01093 377 CDD CYCLIN 96 188 IPR013763 -
Cla05g01093 377 Pfam Cyclin, N-terminal domain 70 195 IPR006671 -
Cla05g01093 377 SUPERFAMILY Cyclin-like 62 196 IPR036915 -
Cla05g01093 377 Pfam Cyclin, C-terminal domain 198 312 IPR004367 -
Cla05g01093 377 PANTHER CYCLIN D3.1 PROTEIN 43 354 - -
Cla05g01093 377 MobiDBLite consensus disorder prediction 306 332 - -
Cla05g01093 377 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Cla05g01093 377 SUPERFAMILY Cyclin-like 199 260 IPR036915 -
Cla05g01093 377 Gene3D - 67 286 - -
Cla05g01093 377 PANTHER CYCLINS 43 354 IPR039361 -
Cla05g01093 377 SMART cyclin_7 202 290 IPR013763 -
Cla05g01093 377 SMART cyclin_7 101 189 IPR013763 -
Cla05g01093 377 SMART Cyclin_C_2 198 333 IPR004367 -
Cla05g01093 377 Gene3D - 78 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01093 Cla-Chr5:11320100 Cla08g01590 Cla-Chr8:28591192 1.77E-99 dispersed
Cla01g01670 Cla-Chr1:31597532 Cla05g01093 Cla-Chr5:11320100 5.31E-86 wgd
Cla02g00627 Cla-Chr2:6991298 Cla05g01093 Cla-Chr5:11320100 2.33E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01093 K14505 - csv:101221213 634.795