Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01097 ATGATGCACACCATGAAACCATCGCAACTTCTGGCTCTGTTTTCCACCTTCACTTTCTGTTTCCCCTGTCTTGCTCTCAACAGCGATGGCATTCTCTTGATTTCTCTCAAACACTCCATTCTCGGCGATCCTTTGTCTGTTTTCGCTAATTGGAATTTCTACGACGACACTCCCTGTTCCTGGCGTGGAGTTACCTGCACCGACCTCCGAGACTATGGCGGCGGATGGTCGGATTTCCTCAGAGTTACTGCCCTCTCCCTCCCTGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTTGGAAGGATCGAACACCTTCGTCTTCTCGATCTTTCCGGTAATTTCTTTAATGGGTCTCTTCCCACTTCCATTTTCAATGCTTCTGAGCTTCAGATTCTTTCTCTTTCCAACAATGTTATCTCCGGCGAGTTGCCGGCGGACATTGGGGGTTTGAAGAGTCTTCAGGTTTTGAATCTCTCTGATAATGCGTTGGCCGGAAAAGTCCCGGGAAATCTCACTGCTCTGAAGAATCTAACTGTTGTTTCTCTGAGGAGTAATTACTTCACCGGAGAGATTCCGGGGAATTTCAGTTCGGTTGAGGTTTTGGATCTGTCTTCCAATTTGTTCAATGGATCTTTGCCGGCTGATTTTGGTGGGGAGAAGCTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTCCGATTCCGCTGGATTTCGCCAAGAGGATTCCAATGAATGCGACTATGGATCTTTCTTTCAATAATCTCACCGGAGCAATTCCTCAGTCGATTGCTCTGCTCAGCCAGAAAACAGAGGCATTCGCCGGAAATGAAGATCTCTGTGGGAAGCCATTGAAGCACCTCTGTTCAATTCCTTCTTCACTCACAACCCCCCCAAATGTTTCTGAAAGTTCATCTTCGTCTCCAGCAATCGCCGCCATACCCAAAACAATCGGCTCTGTTCCGGCAACACAGTCCCCCCGAGGTCCAAACGGGACACAAACTTCTCAGCCTCAAAACGCCATGAAACCCATCACAATAGCTGCAATAGCAGTCGGAGACATCGCCGGAATCGCCATTCTCGCCGTTGTGATTCTCTACGTCTACCACCACCGGAAACGTAAAAACCCCAACTCCAAAACCCCTAAATCCACCGAGAAGAAGCCGCCGATTGACTCAGAACAAGACCCTCAAACTAACCACAAAAAATCCTCATCAGTGTTATTCTGTTTAGCCAACAAAGGAGAAGAGACATCGGAGGCGACGAGTTCTTCCGACGGCGAAGAACAGAGAGAGAAACCCGGAACAACCCACGGCGGAGAGAATAGAGACAGTAAGAAAAACGGCGTGCTGGTGACGGTGGACGGAGAAACAGAGCTGGAATTAGAGACTTTATTAAAGGCATCGGCGTATATACTTGGAGCGAGCGGGGGGAGCATCGTGTACAAGGCGGTGCTGGAGGACGGTACCGCGTTCGCCGTCAGAAGGATCGGCGACGTCAGCGTGGAGAAATTGAGGGATTTTGAGAGCCAAGTGAGAGCCATTGCTAAGGTTCGACATCAAAATTTGGTGAAAATTCGAGGGTTCTTTTGGGGAGAAGATGAGAAGCTCATCATCTATGATTATGTCTCCAATGGCTGCCTTTCAACTTCCCTTCACAGAAAACCGAGTTCATCGTCTTCTTCCCAGAGCCATCTATCATTTGAAGTCCGAGTGAAAATCGCGAGAGGAATCGCCCGAGGACTGGCCTTCATCCACGACAAGAAGCACATCCATGGCAACCTCAAGCCTTCCAACATTCTCTTGAATTCCGAAATGGAGCCCTTAATCGCCGATCTCGGCCTGGACAAGCTCCTCTCCGGCAGATCCAAAATCGCAATCGCCTCCAGTTCTGCCCGAAACTTCGGCAGCCACAGATCCACGCCCAATCGTGAGTACCAAGACGCCAACGGCGGAAGCCCGTCGGTAAGCCTGGGATCGGCGTACCAGGCGCCGGAATCGCTTAAGAATGTGAAAGCGAGCCCTAAATGGGATGTGTATTCGTTCGGGGTGATTCTGCTGGAGGTTGTGAGCGGGAAGATTGTGACGGAGAGGGAATTAGGCGGCGGTGAAGAGGAGGGGCGGATTAAGAAAATGGTGGATTTGGCGATTAGAGGGGAAGTGGAAGGGAAAGAAGAGGCGGTAATGGGGATTTTTAGATTAGGGTTTAGCTGTGTTAGTTTTTTGCCTCAAAAAAGACCCACCATGAAAGAGGCTCTCCAAGTTCTTGACAAAATTTCTTCCATCATTTCTTCTTCTAACACCTAA 2310 49.26 MMHTMKPSQLLALFSTFTFCFPCLALNSDGILLISLKHSILGDPLSVFANWNFYDDTPCSWRGVTCTDLRDYGGGWSDFLRVTALSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPTSIFNASELQILSLSNNVISGELPADIGGLKSLQVLNLSDNALAGKVPGNLTALKNLTVVSLRSNYFTGEIPGNFSSVEVLDLSSNLFNGSLPADFGGEKLRYLNFSYNKISSPIPLDFAKRIPMNATMDLSFNNLTGAIPQSIALLSQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSESSSSSPAIAAIPKTIGSVPATQSPRGPNGTQTSQPQNAMKPITIAAIAVGDIAGIAILAVVILYVYHHRKRKNPNSKTPKSTEKKPPIDSEQDPQTNHKKSSSVLFCLANKGEETSEATSSSDGEEQREKPGTTHGGENRDSKKNGVLVTVDGETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDVSVEKLRDFESQVRAIAKVRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLSTSLHRKPSSSSSSQSHLSFEVRVKIARGIARGLAFIHDKKHIHGNLKPSNILLNSEMEPLIADLGLDKLLSGRSKIAIASSSARNFGSHRSTPNREYQDANGGSPSVSLGSAYQAPESLKNVKASPKWDVYSFGVILLEVVSGKIVTERELGGGEEEGRIKKMVDLAIRGEVEGKEEAVMGIFRLGFSCVSFLPQKRPTMKEALQVLDKISSIISSSNT 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11361460 11365729 - ClCG05G010260.1 Cla05g01097 272587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01097 769 MobiDBLite consensus disorder prediction 635 656 - -
Cla05g01097 769 Gene3D Ribonuclease Inhibitor 26 195 IPR032675 -
Cla05g01097 769 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 21 762 - -
Cla05g01097 769 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cla05g01097 769 MobiDBLite consensus disorder prediction 425 451 - -
Cla05g01097 769 Gene3D Ribonuclease Inhibitor 196 292 IPR032675 -
Cla05g01097 769 PANTHER OS04G0122200 PROTEIN 21 762 - -
Cla05g01097 769 MobiDBLite consensus disorder prediction 380 400 - -
Cla05g01097 769 MobiDBLite consensus disorder prediction 375 451 - -
Cla05g01097 769 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Cla05g01097 769 Gene3D Transferase(Phosphotransferase) domain 1 544 768 - -
Cla05g01097 769 Gene3D Phosphorylase Kinase; domain 1 438 543 - -
Cla05g01097 769 Pfam Protein kinase domain 474 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01097 769 ProSiteProfiles Protein kinase domain profile. 468 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01097 769 SUPERFAMILY L domain-like 26 288 - -
Cla05g01097 769 MobiDBLite consensus disorder prediction 321 340 - -
Cla05g01097 769 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515
Cla05g01097 769 SUPERFAMILY Protein kinase-like (PK-like) 473 760 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00577 Cla-Chr1:6507054 Cla05g01097 Cla-Chr5:11361460 1.15E-127 dispersed
Cla02g00787 Cla-Chr2:10077419 Cla05g01097 Cla-Chr5:11361460 0 dispersed
Cla05g01097 Cla-Chr5:11361460 Cla11g01352 Cla-Chr11:26999967 6.54E-128 dispersed
Cla05g01097 Cla-Chr5:11361460 Cla05g02275 Cla-Chr5:34394583 4.56E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80564 PF00069 Pkinase 1.90E-30 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01097 - - csv:101203801 1244.57