Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01109 ATGTGGGGGAGCAAGCAGTGTAGAAGCTGTTACAATGGAATGGGGGTTCGGCCCAAGAAGAGAAAGGTTGGGCCGAGAAAGAAGGAAGTAGAAAATGGGGTAAAATATGGAGATGGAGCCCAGAATGAGACACGCAATATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAAACAAGGAAGAACCAACAACAACAACGACGACAACCACCACCACCACCACCACCACCACCATTCACCATCGCCTTTTCTTCCTAAAACTCCATTAACAAACATCTCCACCTCCTACAAGATCCATAAACCACCATCCACCCACACCAGGGGCAATATGGAAGAAAGAGATGAAAATACTGATACAGAATCAAGACCTAATAATAATGTTGAAGCCGTACAAGAAGCCAAGGCCTGTGTTGAAGTTGAAGTGCTAACTTGTCTTTCCAATGAGCCAATGCATTCAGGTTATCAGGAATTGGGAACAACTCCAGAATATTCCAGCAAAACTGACGGTCCAGATGAAGAAAAGCCAGGGGTCCAGCATAATATGGAACTTGGTTCGGGATATTTGCTTAGTGAGTTATCAGATAATAATAATGAGACCATCTCTAACCATGCTGATAATGATCAAGTTGAAGCTGGTAATTTATTATCTAGTGATAAAGATACTGAGAATTTAAAATTACCTATTGAAGTTGGGGCAACGACTCTTCTTAATGAGTGCGCGGAACTTCCAGATGTCAACAAAAATTATATTGAACAGATGAACCCTCCTATTGAAGATTTAACTCAAAATATTTCTATCCAAAATTTAGAAATAGTCCCCAGTAATTCCCAACAATTAGGTCACAAGGATAAGAGAATTTTGAAATCAAAGAAGAAAAATTATAAGTTAAGGTCCCTGGTTAATAGCGACAGAGTTTTGCGTTCAAGGACCCAAGAGAAAGCTAAAGCTCCTGAACCAAGTAACGACTTGAATAATTTTACCGCTGAAGAGGGAAAAAGGAAGAAGAGGAAGAAGAAGAGAAATATACAAGGAAAGGGAGCAAGAGTTGATGAGTACTCATCAATTAAGAATCATTTGAGATATTTACTGAACCGCATCAAATATGAACAGAGCTTGATTGAAGCTTATTCTAGTGAAGGCTGGAAAGGGTTCAGCTCAGATAAATTGAAGCCCGAAAAGGAACTTCAGCGGGCATCAAATGAAATAATGCGACGCAAACTGAAAATAAGAGATCTATTTCAACGTATTGATGCACTTTGTGCTGAAGGGAGGCTTTCTGAATCTTTATTCGATTCTGAAGGACAGATAGACAGTGAGGATATATTCTGTGCAAAATGTGGATCCAAAGAACTGTCCCTTGAGAATGACATCATATTATGTGATGGTATTTGTGATCGTGGGTTCCATCAGTTCTGTTTAGAACCACCTTTGCTAAATACAGACATTCCACCGGATGATGAGGGATGGCTATGCCCTGGATGTGATTGCAAAGATGACTGCTTGGATCTGCTCAATGAATTTCAAGGATCAAATCTTTCTATTACTGATGGCTGGGAGAAAGTCTATCCTGAGGCTGCAGCAGCAGCTGCTGGACGAAATTCTGATCACACCTTAGGTCTTCCTTCAGATGATTCTGAAGATGGCGATTATGATCCTGATGTTCCAGATACTATTGACCAGGACAGTGAATCGAGTTCTGATGAATCAAGTTCTGGTCAATCAAATTCTGATACATCTGGGTATGCTTCTGCTTCTGAGGGATTGGAGGTTCCACCTCCTGATGACCAGTACTTAGGTCTCCCTTCTGATGACTCGGAGGATGATGACTATGATCCCAGTGTTCCAGAACTTGATGAAGGTGTTAGACAGGAAAGTTCAAGTTCTGACTTTACATCTGATTCTGAGGATCTAGCTGCACTTGACAATAACCGCTCTTCCAAAGATGATGACCTTGTGTCTTCTTCACTAAATAATACAATGTCTTTGAAAAACTCTAATGGGCAAAGTTCTAGATGCTTTCCTAGCAAGAGTGCATTACATAATGAGTTATCAAGTCTACTAGAGTCCGATCCTGATAAGGATGGTCTTGAACCTGTTTCGGGAAGAAGACAGCGTGTTCTACTCTGGATGTTTACTATGGTAGAAAGACATTCCTTCTCTCTTACAGTAGTATTTATAACATGTGAGTTGGTAATTTTCTCTCTTTCTTCTTTCCCTTCCCTCTTTTCCTTCGAGCAACTTTGGGAAGCTTCCCTTTCTTTCAGTACATATCTAGAAAGAAGGGAAATCTCCTCTCTGTTCTCCAAGGATTTGGGTGCCGTGCGACAAGGTAGGAGGAGAGAGAAAAGCAGACATCCATTGTTGCCAGAAAAGACAAAGAAGAGAATGGAAGAGAGAAAAACCTGTCAAACACATATTCATAATTTAGATATCAATATTCCCTCTCTTTGTTTCCTACGAGTTAATTGTTATTATCATGTAGGGTTTTTTCATAAACTATTATTTATCAAAATAAACCTAGTGTTCTTCAAAGCAAAAAATAGAGGGATTTGTTTTCCATACATTTTAGCAAGTAGGGGAGAGACATACGGGAGTGTTCCTACCGACTCAAGCGATGACACGTACGGGAGTACTTCTATGGACTCAAGTGATGACAGAGGCTGGGATAGTAGTACAAGGAATAGAGGTCCTAAAAAACTGGTTCTTGCATGGTCAAACAATGGAACTAATGATGATTTGACTAATGTAAAAACTAAACGCAGCTATAAGAGGAGAACTCGTCAAAAACCAGCTGCTATAAATGTGAATAATTCTGTGACTGATACTCCTGTAGACACTGCAAAATCTAGTTCTTCTGTTAGGCAAACCACATCATCATCAAACAGAAGACTCAGTCAACCTGCATTGGAGAGACTTTTTGCATCATTCCAAGAAAATGAGTATCCTGAACGAGCTACAAAGGAGAGTTTGGCACAAGAACTAGGGCTCAGTCTAAAGCAGGTTAGCAAATGGTTTGAGAACACACGATGGAGCACACGCCATCCCTCAAGCAGTGGTAATAGAGCAAAGAGTACCTCAAGGATGAGCATTCATTCATCTCAGGCAAGTGAACTACCCAAAAATGAGCAAGAATCTGGTGCATGTTTCAGAGATACCGATAACAATGGTGCTCAACATCAAGACTTACCAACAGTAAATAATGTAGTGGCCTCATGTCATAGTGGGGATACAGGGGATAAGAAATCGGTGACTCAGAAAACTAAAAGAGCGGAATCTTCTGCCACAAAATCCAGAAAACGGAAGAGCAAGTCAGATCACACGGCATCACATTCAAAAGACAAGGAGGAATCACCAAGGCCTCCTGCCAAGTCACCTAAAGTTGATGAAATCCAAACAGCAGATAGGTTTAAGACAAGGAGGAGGAGATCCATTTAG 3534 41.14 MWGSKQCRSCYNGMGVRPKKRKVGPRKKEVENGVKYGDGAQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRTNNNNDDNHHHHHHHHHSPSPFLPKTPLTNISTSYKIHKPPSTHTRGNMEERDENTDTESRPNNNVEAVQEAKACVEVEVLTCLSNEPMHSGYQELGTTPEYSSKTDGPDEEKPGVQHNMELGSGYLLSELSDNNNETISNHADNDQVEAGNLLSSDKDTENLKLPIEVGATTLLNECAELPDVNKNYIEQMNPPIEDLTQNISIQNLEIVPSNSQQLGHKDKRILKSKKKNYKLRSLVNSDRVLRSRTQEKAKAPEPSNDLNNFTAEEGKRKKRKKKRNIQGKGARVDEYSSIKNHLRYLLNRIKYEQSLIEAYSSEGWKGFSSDKLKPEKELQRASNEIMRRKLKIRDLFQRIDALCAEGRLSESLFDSEGQIDSEDIFCAKCGSKELSLENDIILCDGICDRGFHQFCLEPPLLNTDIPPDDEGWLCPGCDCKDDCLDLLNEFQGSNLSITDGWEKVYPEAAAAAAGRNSDHTLGLPSDDSEDGDYDPDVPDTIDQDSESSSDESSSGQSNSDTSGYASASEGLEVPPPDDQYLGLPSDDSEDDDYDPSVPELDEGVRQESSSSDFTSDSEDLAALDNNRSSKDDDLVSSSLNNTMSLKNSNGQSSRCFPSKSALHNELSSLLESDPDKDGLEPVSGRRQRVLLWMFTMVERHSFSLTVVFITCELVIFSLSSFPSLFSFEQLWEASLSFSTYLERREISSLFSKDLGAVRQGRRREKSRHPLLPEKTKKRMEERKTCQTHIHNLDINIPSLCFLRVNCYYHVGFFHKLLFIKINLVFFKAKNRGICFPYILASRGETYGSVPTDSSDDTYGSTSMDSSDDRGWDSSTRNRGPKKLVLAWSNNGTNDDLTNVKTKRSYKRRTRQKPAAINVNNSVTDTPVDTAKSSSSVRQTTSSSNRRLSQPALERLFASFQENEYPERATKESLAQELGLSLKQVSKWFENTRWSTRHPSSSGNRAKSTSRMSIHSSQASELPKNEQESGACFRDTDNNGAQHQDLPTVNNVVASCHSGDTGDKKSVTQKTKRAESSATKSRKRKSKSDHTASHSKDKEESPRPPAKSPKVDEIQTADRFKTRRRRSI 1177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11493168 11505241 - ClCG05G010380.2 Cla05g01109 272599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01109 1177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 532 IPR013083 -
Cla05g01109 1177 ProSitePatterns 'Homeobox' domain signature. 1023 1046 IPR017970 GO:0000981|GO:0006355
Cla05g01109 1177 MobiDBLite consensus disorder prediction 137 154 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 577 596 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 633 647 - -
Cla05g01109 1177 Pfam PHD-finger 475 530 IPR019787 -
Cla05g01109 1177 Gene3D - 983 1057 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 1043 1177 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 899 918 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 184 208 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 117 135 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 184 198 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 1043 1074 - -
Cla05g01109 1177 CDD PHD_PRHA_like 475 527 IPR045876 -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 561 707 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 43 75 - -
Cla05g01109 1177 PANTHER HOMEOBOX PROTEIN HAT3.1 240 738 - -
Cla05g01109 1177 PANTHER HOMEOBOX PROTEIN HAT3.1 905 1062 - -
Cla05g01109 1177 SUPERFAMILY FYVE/PHD zinc finger 465 533 IPR011011 -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 341 380 - -
Cla05g01109 1177 SMART HOX_1 991 1052 IPR001356 GO:0003677
Cla05g01109 1177 MobiDBLite consensus disorder prediction 682 707 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 11 159 - -
Cla05g01109 1177 SUPERFAMILY Homeodomain-like 986 1048 IPR009057 -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 899 927 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 653 672 - -
Cla05g01109 1177 ProSiteProfiles Zinc finger PHD-type profile. 473 530 IPR019787 -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 952 999 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 1081 1106 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 1139 1171 - -
Cla05g01109 1177 CDD homeodomain 995 1049 IPR001356 GO:0003677
Cla05g01109 1177 MobiDBLite consensus disorder prediction 963 999 - -
Cla05g01109 1177 MobiDBLite consensus disorder prediction 597 616 - -
Cla05g01109 1177 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 240 738 - -
Cla05g01109 1177 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 905 1062 - -
Cla05g01109 1177 SMART PHD_3 475 528 IPR001965 -
Cla05g01109 1177 ProSitePatterns Zinc finger PHD-type signature. 476 527 IPR019786 -
Cla05g01109 1177 Pfam Homeodomain 996 1043 IPR001356 GO:0003677
Cla05g01109 1177 ProSiteProfiles 'Homeobox' domain profile. 988 1048 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01109 Cla-Chr5:11493168 Cla06g01355 Cla-Chr6:27047390 2.57E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61076 PF00628 PHD 2.20E-10 CL0390 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01109 - - cmo:103496194 947.962