Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01126 ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTATTCTTCAATTAGAACCCTCAACCATGGATTTTCAGAAAAAAGTTTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACCCTCGAACTCAAATTGAGCTCTCTCTAGGAACCACCAACAACAACAATTCCTTCAGTGGAGCAACACTGCATCCACCCCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTCGATGTATCATCAGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTACTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCGAACACGAACACAAACGGAAGCAGCGGCGGAGGAGGAGTGGTTGAAATGGGTTATCATCATCATCATCATCGAGGCAGCGGAGTTGGAGGAAATAATAATAATAATAATAATAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCAGTAGAAGGAATTAAATGTTTGAATAATAATGTTAATAGTAATAGTAGTAATGCAGCTTCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTTATGGATGTTAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGCATCTCCTACAATGGACACAACCAGAGGGGATCATGGTGCCAAGCAATTTTCCGATCAAAGAGCTCCGCCCGACCGGTCCGGCCAGCCGCTGCCAGAGTTGGAATTTGGCTCCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAAGAAACTCTAATGACATGGATGTCATAACACCAACTTTCATGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGTAATGAAGAGATACAATTCAGAATTCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGACTAA 1347 42.02 MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLNHGFSEKSFDLLIQRNSQFQNNISNDPRTQIELSLGTTNNNNSFSGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNTNGSSGGGGVVEMGYHHHHHRGSGVGGNNNNNNNNNNNNNCSARFNNGVVSVEGIKCLNNNVNSNSSNAASSSSSDVCSHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDASPTMDTTRGDHGAKQFSDQRAPPDRSGQPLPELEFGSSTLWSNSSRDVWPQRNSNDMDVITPTFMSTQQKSMHQIQECDSGVMKRYNSEFKKPSLEFRLGRAEWDVKQD 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11752117 11758548 - ClCG05G010540.2 Cla05g01126 272616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01126 448 MobiDBLite consensus disorder prediction 1 40 - -
Cla05g01126 448 MobiDBLite consensus disorder prediction 12 40 - -
Cla05g01126 448 MobiDBLite consensus disorder prediction 318 393 - -
Cla05g01126 448 MobiDBLite consensus disorder prediction 186 202 - -
Cla05g01126 448 MobiDBLite consensus disorder prediction 371 393 - -
Cla05g01126 448 Gene3D - 263 320 - -
Cla05g01126 448 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 447 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cla05g01126 448 SUPERFAMILY Homeodomain-like 261 317 IPR009057 -
Cla05g01126 448 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 264 317 IPR006447 GO:0003677
Cla05g01126 448 MobiDBLite consensus disorder prediction 318 341 - -
Cla05g01126 448 MobiDBLite consensus disorder prediction 178 202 - -
Cla05g01126 448 Pfam Myb-like DNA-binding domain 265 316 IPR001005 -
Cla05g01126 448 PANTHER TRANSCRIPTION REPRESSOR KAN1 1 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00856 Cla-Chr1:10482717 Cla05g01126 Cla-Chr5:11752117 1.13E-38 dispersed
Cla04g01026 Cla-Chr4:25393128 Cla05g01126 Cla-Chr5:11752117 1.12E-39 dispersed
Cla05g01126 Cla-Chr5:11752117 Cla10g00132 Cla-Chr10:1371990 4.80E-45 dispersed
Cla05g01126 Cla-Chr5:11752117 Cla09g01095 Cla-Chr9:11716157 2.95E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61078 PF00249 Myb_DNA-binding 2.10E-05 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01126 - - csv:101204946 641.728