Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01141 ATGGACGACGAAATTGATGATGATTCAAAGGAAACTGAATTTCAACATCGCATGGGGAATCAACCTCAGTTTCTTCCGTCTTCTTCCTCTAAACCTATTGGCTATCTTTCTGCATTTGTACAGGCTGCGGGAATAAAAGTTCTAGCGGCTCCCGTTTTTGGGAATTTCAAGGGAAGAAAAGAGAAGATGGATTATATGATGGATGGTCGTGGGGGTTATGGCGGTGGGTCAACTGATGAACAAGAAGGTTCTAATGATCGCAAGGGGAAAAAGACTTACCATCGTCATAATCCTTACCAGATTCAGCAACTTGAATCATTTTTCAGGGCATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCAAGAGCTTGGTCTTGAGACCAAACAGATCAAATTTTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAATGAGCGAGCAGACAACTCTTCGCTTCGGACAGAGAATGAAAAGATTCAATGTGAAAATCTTGCGATTAGAGAAGCGTTGAGGAATGTGATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAGGAAGAACGGCAGCGTAATCTCCAAAAACTACGTCTTGAAAATTCTCACTTAAAAGAAGAGCATGACAAAGTGTCTAACCTTCTTGCCAAGTACATTGGAAAACCAATATCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCAATTGATTTGTCACCAAGAAGTTCCCTTACCCAAATAGTTGCAAGTCCTGCAGTCGATCTTATTTCTGATCCTGTGATATTAGATGGAGCAGCAACACCCTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCAACTGCCTTGGAAGAGTTAATCAGACTTCTGAGGATTGATGAGCCTTTGTGGATGAAGACCCTGAATGATGGGAGGTATGTTCTCCATCGTGAAAGCTACGACAAAATATTTCCTAGACCAAATCACTTCAAATCTTCTAGTGCTCGTACTGAATCATCAAAAGCTTCAGGAGTGGTGACAATGAGTGCAATTCAATTGGTTGATTTTTTTTTAGATGCGGTTATTGGTTCAATTGAACAGGATAAATGGGCAGATCTTTTTCCAACCATCATTATGAATGCAGACACATTTCATATTATTGACCCTGGGATGCCTGGAAATCGCAGTGGTGCTTTGCAGTTGATGTATCAACAAATGCACATCTTTTCACCCCTCGTGTCTCCTCGGGACTTCTGCTTCCTTCGACACTGTCAGCAGATTGAGCTTGGTGTCTGGGTAATTGTGGATGTTTCATATGAAATCTTAAAGGATTGTGTCACCTCTGCCCGCTGCTGGAGGCTTCCTTCTGGATGCTTGATTCAAGAAATGCCCAATGGTTGCTCTAAGATTACCTGGGTCGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTCTATCGAGATCTTGTGTTCAATACTTTGGCATATGGAGCCGATCGATGGTTTTTCACTCTTCAAAGGATGTGTGAGAGATTGGCTTACACTTTCAGGGATTGTGCACCTAGCCATGAACTTGGAGGAGTGTTAACTTCTCCCGAAGGTAGGAGAAGCATCACGAAGCTGTCACATAGAATGGTCAAAAATTTCTGTGGCGTACTGAGCATGTCAGGTAAATTAGATTTCCCTCAGTTATCTGAAGTGAACAACAGCGGTGTTCGAATATCTGTTCGGATTAGCTCGGAACTGGGGCAACCCAGTGGGACAGTCGTTAGTGCGGCGACATCTCTTTGGCTTCCCCTGCAACCTGAAATTATCTTTAATTTCTTCAGGGATGAGAAGGCCAGAGTTCAGTGGGATGTTCTCTCTTATGGCAACCCAGTACATGAAATTGCACACATCTTGACAGGAGTTCATCCAGGAAACTCAATATCGATAATTCGGCCATTCGTCCCGACTGAGAACAACATGCTAATTCTTCAAGAAAGCTGCATAGATCCGCTAGGATCCTTAGTGATATATGCACCCATCGACTTGCCTGCTATGAACATTGCAACAAGTGGTCAGGACCCATCAGGGATACCGATACTTCCATCAGGGTTTGTAATCACAGGGGATGGCCGTATGCATTCAGGAATTGGAGCTTCGACGAGTGCTACCTCAGGGAGGCCGAGCGGGTCTCTGTTAACCATAGCTTTTCAGATATTGGTGTCCAGTGTATCATCTTCAAAACAACTGAATGTGGAGTCTGTGGCAACAGTGAATACTCTTATTAGTGCCACAGTTCAGAGGATAAAGGCTGCATTGAATTGCTCTGGCTTGGATTGA 2340 43.76 MDDEIDDDSKETEFQHRMGNQPQFLPSSSSKPIGYLSAFVQAAGIKVLAAPVFGNFKGRKEKMDYMMDGRGGYGGGSTDEQEGSNDRKGKKTYHRHNPYQIQQLESFFRACPHPDENQRRQLSQELGLETKQIKFWFQNKRTQTKAQNERADNSSLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEHDKVSNLLAKYIGKPISQLESLLPVLGSSIDLSPRSSLTQIVASPAVDLISDPVILDGAATPYQSRGINDLENALMLETAATALEELIRLLRIDEPLWMKTLNDGRYVLHRESYDKIFPRPNHFKSSSARTESSKASGVVTMSAIQLVDFFLDAVIGSIEQDKWADLFPTIIMNADTFHIIDPGMPGNRSGALQLMYQQMHIFSPLVSPRDFCFLRHCQQIELGVWVIVDVSYEILKDCVTSARCWRLPSGCLIQEMPNGCSKITWVEHVEVDDKTQTHRLYRDLVFNTLAYGADRWFFTLQRMCERLAYTFRDCAPSHELGGVLTSPEGRRSITKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNSGVRISVRISSELGQPSGTVVSAATSLWLPLQPEIIFNFFRDEKARVQWDVLSYGNPVHEIAHILTGVHPGNSISIIRPFVPTENNMLILQESCIDPLGSLVIYAPIDLPAMNIATSGQDPSGIPILPSGFVITGDGRMHSGIGASTSATSGRPSGSLLTIAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKAALNCSGLD 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12124146 12128855 + ClCG05G010710.1 Cla05g01141 272631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01141 779 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG12-RELATED 79 774 - -
Cla05g01141 779 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Cla05g01141 779 Coils Coil 146 166 - -
Cla05g01141 779 Pfam START domain 289 516 IPR002913 GO:0008289
Cla05g01141 779 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Cla05g01141 779 SUPERFAMILY Bet v1-like 280 518 - -
Cla05g01141 779 Coils Coil 189 216 - -
Cla05g01141 779 CDD homeodomain 90 148 IPR001356 GO:0003677
Cla05g01141 779 MobiDBLite consensus disorder prediction 67 93 - -
Cla05g01141 779 Gene3D - 287 495 IPR023393 -
Cla05g01141 779 SUPERFAMILY Homeodomain-like 76 148 IPR009057 -
Cla05g01141 779 Gene3D - 77 164 - -
Cla05g01141 779 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 79 774 IPR042160 -
Cla05g01141 779 SUPERFAMILY Bet v1-like 537 711 - -
Cla05g01141 779 SMART START_1 287 516 IPR002913 GO:0008289
Cla05g01141 779 CDD START_ArGLABRA2_like 283 515 - -
Cla05g01141 779 ProSiteProfiles START domain profile. 278 519 IPR002913 GO:0008289
Cla05g01141 779 SMART HOX_1 89 151 IPR001356 GO:0003677
Cla05g01141 779 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Cla05g01141 779 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01235 Cla-Chr4:27472728 Cla05g01141 Cla-Chr5:12124146 0 dispersed
Cla05g01141 Cla-Chr5:12124146 Cla09g01099 Cla-Chr9:11839186 2.02E-179 dispersed
Cla05g01141 Cla-Chr5:12124146 Cla02g00180 Cla-Chr2:1839253 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61079 PF01852 START 2.70E-34 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01141 K09338 - csv:101205899 1315.83