Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01171 ATGGCGACGAAGATCGACGTAATCGAAGAGGAAGAAATCTCAAAGCTCAAAGAAGGCACTCTCATTTCCGCCGTCGCCCGACTCTGTCCCTCGAATTCGGTCGTCATCATCCAAAAGGTTATCGCGGAGGTGATCGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATTTATGGATCAGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTGTATTCGGTGGGACACATCTCTGGAGCGCACTTCAACCCTGCTGTTACTCTCACCTTTGCCCTTTTTCGTCGCTTCCCCTTCTCTTGGGTACCAATATACATAGGAGCTCAAGTGATGGGGTCCCTTCTGGCAAGCTGCACATTGGACCTAATGCTTGAAGTGACCCCGGAAGCCTTTTTTGGGACGGTGCCCGTTGGATCCAATCTCCAATCTTTGGTTCTTGAAATTACCATCACATTTCTCTTGATGTTTGTCGTCTCTGGGGTCTCCACTGATGACAGAGCCGTAAGTCATTCTAAAATATCAACACGAATTAACATCATTTTTCTTTACTTTTTATTTATTGCCCATGCTGTTATCGCGGAGGTGATCGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATTTATGGATCAGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTGTATTCGGTGGGACACATCTCTGGAGCGCACTTCAACCCTGCTGTTACTCTCACCTTTGCCCTTTTTCGTCGCTTCCCCTTCTCTTGGGTACCAATATACATAGGAGCTCAAGTGATGGGGTCCCTTCTGGCAAGCTGCACATTGGACCTAATGCTTGAAGTGACCCCGGAAGCCTTTTTTGGGACGGTGCCCGTTGGATCCAATCTCCAATCTTTGGTTCTTGAAATTACCATCACATTTCTCTTGATGTTTGTCGTCTCTGGGGTCTCCACTGATGACAGAGCCGTAGGAGAATTGGGAGGAATTGTGGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCAATTTCAGGAGCTTCTATGAATCCAGCTAGGAGCATTGGACCAGCAATAGTGAAACGACAGTTCAAAGGATTATGGGTTTACATAGTAGGACCATTGGTCGGAGCGGTCGCCGGAGGATTTTCCTATAACCTTCTTAGATTCACAAACAAGCCACTGCGAGAGATTGCCAAAAGCAGCTCATTTCTCACCGCCAACTAG 1290 47.91 MATKIDVIEEEEISKLKEGTLISAVARLCPSNSVVIIQKVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTLTFALFRRFPFSWVPIYIGAQVMGSLLASCTLDLMLEVTPEAFFGTVPVGSNLQSLVLEITITFLLMFVVSGVSTDDRAVSHSKISTRINIIFLYFLFIAHAVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTLTFALFRRFPFSWVPIYIGAQVMGSLLASCTLDLMLEVTPEAFFGTVPVGSNLQSLVLEITITFLLMFVVSGVSTDDRAVGELGGIVVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQFKGLWVYIVGPLVGAVAGGFSYNLLRFTNKPLREIAKSSSFLTAN 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12728940 12742035 - ClCG05G010990.1 Cla05g01171 272661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01171 429 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Cla05g01171 429 SUPERFAMILY Aquaporin-like 193 419 IPR023271 -
Cla05g01171 429 SUPERFAMILY Aquaporin-like 37 183 IPR023271 -
Cla05g01171 429 Gene3D Glycerol uptake facilitator protein. 200 421 IPR023271 -
Cla05g01171 429 Gene3D Glycerol uptake facilitator protein. 6 199 IPR023271 -
Cla05g01171 429 PRINTS Major intrinsic protein family signature 389 409 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g01171 429 PRINTS Major intrinsic protein family signature 321 339 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g01171 429 PRINTS Major intrinsic protein family signature 201 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g01171 429 PRINTS Major intrinsic protein family signature 276 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g01171 429 PRINTS Major intrinsic protein family signature 239 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g01171 429 PRINTS Major intrinsic protein family signature 352 374 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g01171 429 PANTHER AQUAPORIN NIP2-1 25 191 IPR034294 -
Cla05g01171 429 PANTHER AQUAPORIN NIP2-1 199 421 IPR034294 -
Cla05g01171 429 PANTHER AQUAPORIN NIP4-1-RELATED 25 191 - -
Cla05g01171 429 PANTHER AQUAPORIN NIP4-1-RELATED 199 421 - -
Cla05g01171 429 TIGRFAM MIP: MIP family channel proteins 205 406 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g01171 429 ProSitePatterns MIP family signature. 257 265 IPR022357 -
Cla05g01171 429 Pfam Major intrinsic protein 33 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g01171 429 Pfam Major intrinsic protein 201 406 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02344 Cla-Chr1:37213383 Cla05g01171 Cla-Chr5:12728940 1.77E-52 dispersed
Cla05g00575 Cla-Chr5:5252238 Cla05g01171 Cla-Chr5:12728940 1.30E-15 dispersed
Cla05g01171 Cla-Chr5:12728940 Cla10g01435 Cla-Chr10:29506057 1.56E-32 dispersed
Cla05g01171 Cla-Chr5:12728940 Cla10g01892 Cla-Chr10:34818950 1.63E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01171 K09874 - csv:101215315 402.134