Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g01194 | ATGGAGAATTTAATGGGTTTGCTAAGAATCCATGTGTTTAGAGGTGTTAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTAAAGACTCGAGTAGTGAAGCAAAACATCAATCCAGAATGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATCTCCCAGTGAATGTGCTCGTATACGACAGAGACTTATTCTCACTTGACGACAAGATGGGGGATGCAGAGTTCGACGTTCGACCGTTCATGGAAGCGGTGAAGATGAGATTGAACAATCTCCCAAGTGGCACCATCATAACAAAGATTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGTTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAG | 498 | 39.56 | MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPNLPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKIQPSRENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 13172800 | 13174901 | - | ClCG05G011210.2 | Cla05g01194 | 272684 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g01194 | 165 | Gene3D | C2 domain | 4 | 160 | IPR035892 | - | |
| Cla05g01194 | 165 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Cla05g01194 | 165 | CDD | C2_ArfGAP | 6 | 148 | - | - | |
| Cla05g01194 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 91 | IPR035892 | - | |
| Cla05g01194 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 164 | IPR044562 | - | |
| Cla05g01194 | 165 | Pfam | C2 domain | 6 | 93 | IPR000008 | - | |
| Cla05g01194 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Cla05g01194 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 1-LIKE | 1 | 164 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01105 | Cla-Chr1:18024010 | Cla05g01194 | Cla-Chr5:13172800 | 5.14E-38 | dispersed | |
| Cla01g02070 | Cla-Chr1:35132305 | Cla05g01194 | Cla-Chr5:13172800 | 1.52E-42 | dispersed | |
| Cla05g01194 | Cla-Chr5:13172800 | Cla06g01419 | Cla-Chr6:27743172 | 1.10E-82 | dispersed | |
| Cla05g01194 | Cla-Chr5:13172800 | Cla04g01044 | Cla-Chr4:25616339 | 1.53E-82 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g01194 | - | - | csv:101218477 | 322.783 |