Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01204 ATGATCTTTTCATGGAGGAAAAACAAATTTGGGTTTCTTACCAAGTTGAAGAAAGAGCTTCCGGGGGTCGATTCGGGTTCGGAAATTGCGATTCCTTCGCATTATATGTGTCCGATTTCGCTTGATTTGATGAAGGACCCTGTGATTTTGTCCACTGGGATTACTTATGATAGAGAGAGTATCGAGAAGTGGATTGAGGGGGGAAATTTTTCATGTCCTGTGACGAAACAGGATTTGATGAATTTCGACCTAATCCCTAATCATGCGTTGAGGAGGTTGATCCAAGATTGGTGTGTTGCGAATCGTTCATACGGGATCGAGCGGATTCCGACGCCGCGGATTCCGGTTACCCCGTATGAAGTTAAGGAGATTTGTTCGAGAATTTCGGTCGCGACTCAAAGAAGCGACTCGAAGAGGTGCAGTGAATTAGTTGGTAAGATCAGGAATTGGGCAAAAGAGAGCGAGAGGAATCGGAGGTGTATTGTGAATGGAGGAACTGGGGATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGCTTGTGTGTTCCCAGTCGCCATTGAAGGCTTATCCAAGCTCGGATCTGCTGATTCTTTGAGAAGTTTGGTTTCCTTCTTAATTGGCAAAGATCTTTCTCCCAAACAGAACGCAGTTTTTGTTCTGAAAGAACTCTTGTCAGCTGATCGAAGATATGTTAATTCATTGGCTGCCATTGAAGGAGTATCAGAAGCTTTAGTTAGCATTATCAGGGATCCTCTTTGCCCCTCTGCTACAAAAGCATCTCTTACAGCCATTTTTTACATGATTTTACCATCAGAAATCGGTGAGAAAATGGCATTGAAATTTGTGGAACTTGGCTTGGTCTCTCAGCTACTAGAATTTTTGGTAGATGCAGAGAAAAGTCTATGTGAGAAAGCTTTGGGAATTTTGGATGGAATCTGTGATTACAAACAAGGAAGAGAGAAGCTTTACGAGAATGCACTAACCATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGTTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTCTGCAAGAGTGGTGAGAAGGGTGAAAATGAGGTGAGGGTGGAAGCAGCCCAACTGGGTGCTTTCCAGAAGATATTGGTTCTCTTACAGGTTGGTTGTGGTGGTGACATGAAAGACAAGGTCACCGAGATGTTGAAATTATTGAATCTCTACAAAGATAGGCTAGAATGCATCGATTCATCCATGCATTTTAAGTACTTGAAGAAATCATTTTGA 1329 42.29 MIFSWRKNKFGFLTKLKKELPGVDSGSEIAIPSHYMCPISLDLMKDPVILSTGITYDRESIEKWIEGGNFSCPVTKQDLMNFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVTPYEVKEICSRISVATQRSDSKRCSELVGKIRNWAKESERNRRCIVNGGTGDVLAASFEHFAGVSIEKHVGLLEEILLVLACVFPVAIEGLSKLGSADSLRSLVSFLIGKDLSPKQNAVFVLKELLSADRRYVNSLAAIEGVSEALVSIIRDPLCPSATKASLTAIFYMILPSEIGEKMALKFVELGLVSQLLEFLVDAEKSLCEKALGILDGICDYKQGREKLYENALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGENEVRVEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLKLLNLYKDRLECIDSSMHFKYLKKSF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13390525 13391853 + ClCG05G011340.1 Cla05g01204 272694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01204 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Cla05g01204 442 PANTHER WDSAM1 PROTEIN 25 442 IPR045185 GO:0061630
Cla05g01204 442 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 25 442 - -
Cla05g01204 442 CDD RING-Ubox_PUB 37 77 IPR045210 -
Cla05g01204 442 SUPERFAMILY ARM repeat 206 400 IPR016024 -
Cla05g01204 442 SUPERFAMILY RING/U-box 25 107 - -
Cla05g01204 442 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Cla05g01204 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Cla05g01204 442 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Cla05g01204 442 Gene3D - 121 417 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01082 Cla-Chr5:11199364 Cla05g01204 Cla-Chr5:13390525 4.40E-69 dispersed
Cla05g01204 Cla-Chr5:13390525 Cla07g00524 Cla-Chr7:7795653 1.15E-159 dispersed
Cla05g01204 Cla-Chr5:13390525 Cla10g01740 Cla-Chr10:33280755 8.67E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01204 - - csv:101220059 840.491