Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01211 ATGGAGTTCCCCCAAGGAATTTTAGCGGCGGCGGTTCTGAGTTTCGCTTTTCTGGGTTTTGTCCGGATGGATCTGGCCTCTGACAGGGCCGCGCTGGTGGGGTTTCGGGCGGCGATGGGTGGCCGGCCCCGATTAGAGTGGAATCTCTCCGATGTATCACCCTGTTCTTGGGCTGGTGTTAACTGTGACAGGAGTGGGGTTTTTGAGCTCCGGCTTCCGGCAATGGGGCTCTCCGGTGAGCTTCCCTTGGGGCTTGGGAATTTGACGCAGTTACAAACTCTTTCTCTGCGGTTTAATGCTCTGTCTGGACGGATTCCGGCGGATTTTGCGAATCTTCGTGGGCTGAGGAATCTTTACTTGCAGGGGAACTTGTTTTACGGCGAGATTCCGGCGTTTCTGTTCAATTTGCAGAATCTTGTTCGGTTGAACATGGCGGACAACAATTTTTCAGGTGAGATTTCATCTGGGTTCAACAATCTCTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAATTTACCGGAGTAGTTCCTGACTTAAATCTCACTCTTGAACAATTTAATGTCTCCTTTAATCGATTGAATGGTTCAATTCCCTCGAGGCTCTCTAGTTTTCCGGCGAGTTGTTTTGAGGGGAATTTGCTCTGTGGGGCGCCATTGTTACTCTGTAACTCGACAGCCACCGAGCCTGGTCGAAAGTCGAAGCTCTCAGGCGGGGCGATTGCTGGAATTGTGATCGGTGGTTTGTTTGTTTTGGTGTTGATTTTGGTTGTTTTGATTCTTGTGTGTCAAAGAAAGAGTAAAGGGAAATCGGAGTCGAAAGAGGGGGTTCGGTCGGCTGGTGAGGTTGGGGTGCCGAGAGAGAAGATGACGACAGTGGAAGGAAGTAGCGAAAGGGTAAGCATAGATCATTTGACTATAGCGAAATCATCAGGGAAGGGCGGGGAAAAGGATAAGAAATTGGTGTTCTTTGGTAATGTGGGAAATGTGTTTGATTTGGAGGACTTGTTGAGGGCGTCGGCGGAGGTCCTCGGGAAGGGGGCGTTCGGGACAGCGTATAAGGCGACACTGGAGACAGGGATGGTGGTGGCTGTGAAGCGGTTGAAGGAGATGACTGCGGCGGAGAAGGAGTTCAGGGAGAAAATGGAGGAGGTGGGGAGGATGAAGCATGAAAATTTAGTTCCTCTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGTAGAGAATCAGGGAGGACTCCGTTGAATTGGGAAGCAAGGTGTGGCATAGCGCTGGGAGTTAGCCGTGGGATTGATTACCTTCATTCTCAAGGCCCTACCATCTCTCATGGCAACATCAAATCCTCTAATGTTCTCCTCACCAGATCATATGAAGCATGTGTATCCGACTTTGGCCTTGCACAACTAGCCATGTCCCCATCAGCTCCAAGTCGTGTCGCTGGGTACCGAGCCCCAGAGATCACGGATTCTCGAAAGGTATCACAAAAAGCAGATGTTTATAGCTTCGGAGTGTTGTTATTGGAGATGCTAACAGGAAAATCTCCTACACATTCTATCTTCAATGATGAAGCTGTGGACCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAACAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTAGAACTCGCTCTGCAATGTACCGTCCCGTATCCTGATAATCGTCCTGGAACGGACGAGATTGTTCGACGTATCGAAGAACTTTGTCGATCAACCTCCCAAAAACAGAGTGAGGCAATTGACAATGATGGAAATAATGGTATTTCCACACAGTTTCATTCACTAAACTCACCTCATCCACCATCTGCAGAGTAG 1932 48.19 MEFPQGILAAAVLSFAFLGFVRMDLASDRAALVGFRAAMGGRPRLEWNLSDVSPCSWAGVNCDRSGVFELRLPAMGLSGELPLGLGNLTQLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNLFYGEIPAFLFNLQNLVRLNMADNNFSGEISSGFNNLSRLATLYLQNNQFTGVVPDLNLTLEQFNVSFNRLNGSIPSRLSSFPASCFEGNLLCGAPLLLCNSTATEPGRKSKLSGGAIAGIVIGGLFVLVLILVVLILVCQRKSKGKSESKEGVRSAGEVGVPREKMTTVEGSSERVSIDHLTIAKSSGKGGEKDKKLVFFGNVGNVFDLEDLLRASAEVLGKGAFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGRMKHENLVPLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARCGIALGVSRGIDYLHSQGPTISHGNIKSSNVLLTRSYEACVSDFGLAQLAMSPSAPSRVAGYRAPEITDSRKVSQKADVYSFGVLLLEMLTGKSPTHSIFNDEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLELALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDNDGNNGISTQFHSLNSPHPPSAE 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13547561 13549839 + ClCG05G011410.1 Cla05g01211 272701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01211 643 Gene3D Transferase(Phosphotransferase) domain 1 413 631 - -
Cla05g01211 643 PANTHER INACTIVE RECEPTOR KINASE-RELATED 21 619 - -
Cla05g01211 643 SUPERFAMILY Protein kinase-like (PK-like) 342 604 IPR011009 -
Cla05g01211 643 ProSiteProfiles Protein kinase domain profile. 338 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01211 643 Gene3D Ribonuclease Inhibitor 25 209 IPR032675 -
Cla05g01211 643 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Cla05g01211 643 SUPERFAMILY L domain-like 46 205 - -
Cla05g01211 643 Coils Coil 371 391 - -
Cla05g01211 643 MobiDBLite consensus disorder prediction 612 643 - -
Cla05g01211 643 CDD STKc_IRAK 344 607 - -
Cla05g01211 643 SMART LRR_typ_2 88 111 IPR003591 -
Cla05g01211 643 SMART LRR_typ_2 160 183 IPR003591 -
Cla05g01211 643 SMART LRR_typ_2 112 136 IPR003591 -
Cla05g01211 643 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cla05g01211 643 PANTHER OS05G0588300 PROTEIN 21 619 - -
Cla05g01211 643 Gene3D Phosphorylase Kinase; domain 1 308 412 - -
Cla05g01211 643 Pfam Protein kinase domain 341 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00851 Cla-Chr1:10404260 Cla05g01211 Cla-Chr5:13547561 0 dispersed
Cla04g01034 Cla-Chr4:25495753 Cla05g01211 Cla-Chr5:13547561 0 dispersed
Cla05g01211 Cla-Chr5:13547561 Cla11g00245 Cla-Chr11:2868483 0 dispersed
Cla07g01399 Cla-Chr7:31128770 Cla05g01211 Cla-Chr5:13547561 3.23E-107 dispersed
Cla09g00856 Cla-Chr9:8791242 Cla05g01211 Cla-Chr5:13547561 9.92E-82 dispersed
Cla09g01839 Cla-Chr9:36058079 Cla05g01211 Cla-Chr5:13547561 8.38E-96 dispersed
Cla10g02119 Cla-Chr10:36865747 Cla05g01211 Cla-Chr5:13547561 2.05E-10 dispersed
Cla05g01211 Cla-Chr5:13547561 Cla06g01042 Cla-Chr6:22563430 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80565 PF00069 Pkinase 1.70E-38 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01211 - - csv:101221942 1105.51