Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01223 ATGGCGACGCTAATGTCGGGCTCCAGAATTCAACCAGCAGCTTCTGTTCTTTCCTCATCCATCAAGCGCCATGTGGGTTTTAATTCCCACCTTCGTTCCAATTGCTCGCTTTCTCGTTTTCACCATTCTTCATTCTCCTTCAGGCGCGCTGGACCTAGACGATCTCTCTCTGTTTCCATGTCCGTTACCCCTCTAGAAGCCTGCGTCAAAGCTTCCATTACCGTACCCAACAAGCTCGGCGACTGCCCTTTTTGTCAAAGGGTATTACTGACTTTGGAGGAAAAGCATGTACCCTATGACTTAAAGTTGGTAGACCTGTCAAACAAGCCAGAATGGTTCTTAAAAATAAATTCAGAGGGCAAAGTTCCCGTTGTTAAATTTGATGAGCAGTGGGTTGCAGATTCAGATATTATAACACAAACACTGGAAGAGAAGTACCCAAATCCACCTTTAGCTACCCCTCCTGACAAATCTTCAGTAGGATCAAAGATTTTCTCCACATTTATTGCTTTTCTAAAGAGCAAGGATCCTAACGATGGAACAGAACAAGCATTGATTAGCGAGCTAAGTTCTTTCAATGATCACATCAAAGAGAATGGCTCTTTTATCAACGGGAAAGAGATTTCTGCTGCAGACCTGTCACTTGGTCCAAAGTTGTACCATCTAGAAATTGCATTGGGTCACTACAAGAACTGGTCTGTTCCAGACAGTCTTCCTTACGTTAAATCTTACATGAAGAGCATATTTTCAAGAGAATCATTTGCAAACACTCGTGCCCTGCCTGAGGATGTTATTGCTGGTTGGCGTCCGAAGGCAGGCGCTGTAGTCATTAAAAGTTTTAATAAATATGATGCAATGAGTGTTTTTTCTCCTGCTTCTCTAGTCACACTCAAGGCTGTTTAG 903 43.08 MATLMSGSRIQPAASVLSSSIKRHVGFNSHLRSNCSLSRFHHSSFSFRRAGPRRSLSVSMSVTPLEACVKASITVPNKLGDCPFCQRVLLTLEEKHVPYDLKLVDLSNKPEWFLKINSEGKVPVVKFDEQWVADSDIITQTLEEKYPNPPLATPPDKSSVGSKIFSTFIAFLKSKDPNDGTEQALISELSSFNDHIKENGSFINGKEISAADLSLGPKLYHLEIALGHYKNWSVPDSLPYVKSYMKSIFSRESFANTRALPEDVIAGWRPKAGAVVIKSFNKYDAMSVFSPASLVTLKAV 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13795738 13801153 - ClCG05G011540.2 Cla05g01223 272713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01223 300 Gene3D Glutaredoxin 63 151 - -
Cla05g01223 300 SUPERFAMILY GST C-terminal domain-like 145 271 IPR036282 -
Cla05g01223 300 Gene3D - 152 274 - -
Cla05g01223 300 SUPERFAMILY Thioredoxin-like 80 149 IPR036249 -
Cla05g01223 300 CDD GST_C_DHAR 151 271 - -
Cla05g01223 300 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 72 150 IPR004045 -
Cla05g01223 300 SFLD Glutathione Transferase (cytosolic) 81 248 IPR040079 -
Cla05g01223 300 CDD GST_N_family 82 143 - -
Cla05g01223 300 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 5 272 IPR044627 GO:0033355|GO:0045174|GO:0098869
Cla05g01223 300 Pfam Glutathione S-transferase, N-terminal domain 81 150 IPR004045 -
Cla05g01223 300 SFLD Main (cytGST) 81 248 - -
Cla05g01223 300 PANTHER GLUTATHIONE S-TRANSFERASE DHAR3, CHLOROPLASTIC 5 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01324 Cla-Chr2:27422408 Cla05g01223 Cla-Chr5:13795738 3.38E-77 dispersed
Cla05g01223 Cla-Chr5:13795738 Cla05g00387 Cla-Chr5:3515056 9.17E-08 dispersed
Cla05g01223 Cla-Chr5:13795738 Cla02g01351 Cla-Chr2:27759167 1.08E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01223 K21888 - csv:101203335 500.745