Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01228 ATGAAGCGAGGCCACACCCATCAATCCTCAAATTCCGCCGCCGCAGCCGCTGGCAACCCCAAGACATGGGCGGTCGAGGATGAGGAAGACGACGACAAGCATCTAGCTGCTCTTGGGTACAATGTCCGGTCGTCGGACATGGCGGACGTAGCTCTGAAACTGGAACAGCTAGAAATGGTAATGGGTTTGTCGGAAGAAGATGGAATTTCTCACCTCTCTTCCAATACAGTCCATTACAATCCCTCCGATGTTTCTTCTTGGGTTCAAAGCATGCTCGCTGAACTCAATACTCCGCTTCAATCCCAAGGAATAACCCACGATCCTGTTCTTGCCATAGCTGAATCCACTTCCTCCTCCATCGCCGCCGCCTTCACCGACGATTCTGAGTATGATCTCAGAGCCATTCCTGGAGTTGCTGCTTTCCCACAAATCGATTCCACCAACCCCAGAAAGCGATTCAAGAAATCAGATTCCGAATCGCTTCTTGTTACTGCATCTTCTTCTTCTTCTTCGTCGTCGTCGGAGCAGTCGCGCTCGGTGGTTCTGGTGGATTCCGCCGAGACTGGCGTCCGTCTGGTCCACAGCCTTCTCGCCTGCGCCGACGCCGTCCACACAAACAATCTCAACCTTGCCGAGGCTCTACTAAAACACATCAGAATCCTCGTTGAAGCTCAGGCCGGCGCTATGAGAAAAGTCGCCGGCTATTTCGCTCAAGCCCTCTCTCGCCGGATTTACAGATTTTACCCACAAAAGCCCTTCGATTATTCATCTTCATACACCGATCTTCTCCAAATGCATTTCTATGAATCTTGCCCCTATCTGAAATTCGCCCATTTCACTGCCAATCAAGCCATTCTCGAATCCGTTGGTTCTGCTGGTACCGTCCACGTCGTCGATTTCAACCTCCAGCAAGGCCACCAATGGCCGCCGTTGATTCAGGCCTTCGCACTCCGACCAGGTGGGCCTCCGGCGTTTCATCTTACTGGAATCCATCCCCCGCCGGAGGAAAATTCCACCGACGGATTACAGGAAGTGGGTTCGAAATTGGCGCAATTCGCGGATAAATTCGGCGTAAAATTCGAATTTCGTGGGTTCTTCTGCAACAATTTGGCCGATCTGGAACCGTCAATACTCAATTTAGAAACAGAAACCGTCGCTATAAACTCCATTTTCGAGCTCCACCGGCTACTGGCCAATCCGGGCGCGATTGAAAAAGCTCTAACAACAATCAAAGAACTTAACCCCAAAATCGTCACCGTCGTGGAGCAGGTCGCCGACCACAACGGACCGTCGTTCGTAGAACGATTCACAGAAGCTCTACACTATTATTCGAGCTTATTCGATTCGTTAGAAGGGTCGCCGGCAGGGGAGGAGGATGTGGTGAGGTCAGAGGAATATTTAGGGAGACAAATCTGCAACGTAGTGGCGTGTGAAGGTTCCGACCGTGTCGAGCGTCATGAAACGGTGGCGCAGTGGCGGAGCCGGTTACGCTCGAGTGGATTCGAGATGGTTCATATGGGTTCGAACGCTTTCAAGCAGGCCAGTACTTTGCTGGCGGCTCTGTTCGGAGGTGGAAATGGATACAGAGTTGAAGAGAATAATGGGAGTTTGACGTTGGGATGGCACACTCGGCCGCTCATCGCCACTTCGGCCTGGACGCTGGCCGGAGGCGGGGACAGCGGCGAGTCGACTCGGCCGAGTTCAGGACAGATCTGA 1716 52.56 MKRGHTHQSSNSAAAAAGNPKTWAVEDEEDDDKHLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNTPLQSQGITHDPVLAIAESTSSSIAAAFTDDSEYDLRAIPGVAAFPQIDSTNPRKRFKKSDSESLLVTASSSSSSSSSEQSRSVVLVDSAETGVRLVHSLLACADAVHTNNLNLAEALLKHIRILVEAQAGAMRKVAGYFAQALSRRIYRFYPQKPFDYSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGSAGTVHVVDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGIHPPPEENSTDGLQEVGSKLAQFADKFGVKFEFRGFFCNNLADLEPSILNLETETVAINSIFELHRLLANPGAIEKALTTIKELNPKIVTVVEQVADHNGPSFVERFTEALHYYSSLFDSLEGSPAGEEDVVRSEEYLGRQICNVVACEGSDRVERHETVAQWRSRLRSSGFEMVHMGSNAFKQASTLLAALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWTLAGGGDSGESTRPSSGQI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13891382 13893097 + ClCG05G011570.1 Cla05g01228 272718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01228 571 Pfam GRAS domain family 192 553 IPR005202 -
Cla05g01228 571 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 552 IPR005202 -
Cla05g01228 571 Gene3D - 31 95 IPR038088 -
Cla05g01228 571 PANTHER DELLA PROTEIN RGL1 27 552 IPR030006 GO:0003712|GO:0005634
Cla05g01228 571 Pfam Transcriptional regulator DELLA protein N terminal 32 98 IPR021914 -
Cla05g01228 571 SMART DELLA_2 32 105 - -
Cla05g01228 571 ProSiteProfiles GRAS family profile. 183 553 IPR005202 -
Cla05g01228 571 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00815 Cla-Chr3:10353107 Cla05g01228 Cla-Chr5:13891382 0 dispersed
Cla05g01228 Cla-Chr5:13891382 Cla06g01047 Cla-Chr6:22735663 2.53E-150 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61084 PF03514 GRAS 7.70E-124 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01228 K14494 - csv:101203095 979.163