Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01250 | ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGACTCCTGAATCTCAGGCTAACGCTACCGTTTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTCATGAACCTCATCAACGCGGGTCCTGATCATCTCCGTCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAGGCGGCTGTAGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGGCAGCGGCTACTGGCGATGGACCACCGTTGAAGGCCTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGTCGCGTCCAACGATGGTGGAGCCAATCGGCGAGTTAAGACTCGGTGCCGGTTCAAGCGGTCGGCTGTGAAGGCGAAAGGGAGTAAAGGAATCGACTCTACTGTCGATGAGTCGACTCGGCGATTCTGCTCTACCGAGTTGAACAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCCGACTCGCGGCATCTCGAGAACGAGAGTAAAGAAACCGAGAGCATGATTTCAGTGGAGACGGCGGAGGTTTCTCCTCCTCCGATGCCGTCTGTTTTGTTCCGATCGGAATCCAGTTCGGTACTGAAATCCACGGGCCAGGACGGCGGCGTAGTGGCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAGCCGGCGTTACGTGCCCAGCACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCCGACGTTGGGTTCAGGCCCAATAACGACACGTGCAATACAGTTTTGGGCCTTGATTTTTCAGCCTGA | 921 | 52.77 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSVASNDGGANRRVKTRCRFKRSAVKAKGSKGIDSTVDESTRRFCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPPMPSVLFRSESSSVLKSTGQDGGVVAIPQSELALELTLGMEPALRAQHVIPMKKRKIEADVGFRPNNDTCNTVLGLDFSA | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 14582922 | 14584543 | - | ClCG05G011810.1 | Cla05g01250 | 272740 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01250 | 306 | MobiDBLite | consensus disorder prediction | 199 | 214 | - | - | |
Cla05g01250 | 306 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 1 | 302 | - | - | |
Cla05g01250 | 306 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 302 | - | - | |
Cla05g01250 | 306 | MobiDBLite | consensus disorder prediction | 184 | 214 | - | - | |
Cla05g01250 | 306 | MobiDBLite | consensus disorder prediction | 184 | 198 | - | - | |
Cla05g01250 | 306 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Cla05g01250 | 306 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 103 | IPR004883 | - | |
Cla05g01250 | 306 | PIRSF | AS2 | 1 | 301 | IPR017414 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01250 | Cla-Chr5:14582922 | Cla05g02297 | Cla-Chr5:34577729 | 9.80E-67 | dispersed | |
Cla05g01250 | Cla-Chr5:14582922 | Cla06g01470 | Cla-Chr6:28260719 | 1.72E-93 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61086 | PF03195 | LOB | 1.80E-24 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01250 | - | - | csv:101208245 | 535.028 |