Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01250 ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGACTCCTGAATCTCAGGCTAACGCTACCGTTTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTCATGAACCTCATCAACGCGGGTCCTGATCATCTCCGTCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAGGCGGCTGTAGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGGCAGCGGCTACTGGCGATGGACCACCGTTGAAGGCCTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGTCGCGTCCAACGATGGTGGAGCCAATCGGCGAGTTAAGACTCGGTGCCGGTTCAAGCGGTCGGCTGTGAAGGCGAAAGGGAGTAAAGGAATCGACTCTACTGTCGATGAGTCGACTCGGCGATTCTGCTCTACCGAGTTGAACAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCCGACTCGCGGCATCTCGAGAACGAGAGTAAAGAAACCGAGAGCATGATTTCAGTGGAGACGGCGGAGGTTTCTCCTCCTCCGATGCCGTCTGTTTTGTTCCGATCGGAATCCAGTTCGGTACTGAAATCCACGGGCCAGGACGGCGGCGTAGTGGCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAGCCGGCGTTACGTGCCCAGCACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCCGACGTTGGGTTCAGGCCCAATAACGACACGTGCAATACAGTTTTGGGCCTTGATTTTTCAGCCTGA 921 52.77 MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSVASNDGGANRRVKTRCRFKRSAVKAKGSKGIDSTVDESTRRFCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPPMPSVLFRSESSSVLKSTGQDGGVVAIPQSELALELTLGMEPALRAQHVIPMKKRKIEADVGFRPNNDTCNTVLGLDFSA 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14582922 14584543 - ClCG05G011810.1 Cla05g01250 272740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01250 306 MobiDBLite consensus disorder prediction 199 214 - -
Cla05g01250 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 302 - -
Cla05g01250 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 302 - -
Cla05g01250 306 MobiDBLite consensus disorder prediction 184 214 - -
Cla05g01250 306 MobiDBLite consensus disorder prediction 184 198 - -
Cla05g01250 306 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cla05g01250 306 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cla05g01250 306 PIRSF AS2 1 301 IPR017414 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01250 Cla-Chr5:14582922 Cla05g02297 Cla-Chr5:34577729 9.80E-67 dispersed
Cla05g01250 Cla-Chr5:14582922 Cla06g01470 Cla-Chr6:28260719 1.72E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61086 PF03195 LOB 1.80E-24 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01250 - - csv:101208245 535.028