Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01259 ATGATCCATACTTCTGAACTGAAGCGTCAAATTTCAACACCGGGTCATCTCTCGCTCAATCCGCCGGTGTCCTCCGTCGCATTTTCCAGCGTCCGACACCGGATAATTCCACCGTCGACTGAAACCATTCCGATAGACTACGTCATGGAAGCCGCCTCCGGACCTCACTTCTCTGGCCTCAGACTCGATGGACGTCTCTCCTCTCCGCCGTCTTCCTCAACTTCCTCTCCGGCTCACCGCTCTTCTCTTTCCGCTTCCTTTGCACAGGCCGATGCCAACTCTCCTAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACCGCTTCTGGGAAGACGACGGTGTGTGACATGATTATCCAGCAACTTCATGATCACAGGGTTGTGCTGGTCAATCAGGACTCCTTTTACCGCGGGTTGACAGCTGAGGAACTAGAACGCGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTGTAGATTGCATCGAGAAGCTTAAGAGTGGCCAACCTTACCATGTCCCAATTTATGATTTTAAAACTCATCAACGGTGTGTAGATAGTTTTCGACAGGTAAATGCATCTAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAAAGAGTCCGCAATCTGATGAATATGAAGATATTTGTTGACACAGATCCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACAGTAGAGAGGGGCAGGGACATTAACTCTGTTCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCGTCAAAGAAGTACGCTGATGTGATCATACCGCGTGGGGGTGATAACCATGTTGCAATTGATCTGATTGTGCAACACATCCATACTAAGTTAGGCCAGCACGACCTATGCAAAATATACCCTAATGTCACTGTCATTCAGTCAACATTTCAGATAAGAGGCATGCATACATTAATTCGAGATCGGGACATTTCAAAGCATGATTTTGTATTCTATTCAGATCGACTTATTCGTCTGGTTGTGGAGCACGGCCTTGGTCATTTGCCGTTTACTGAAAAGCAAGTAATCACTCCTACAGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATCGTTCGAAGTGGTGAAAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTTTGATTCACCGTGAGGGAGACAATGGGAAGCAGCTGATATATGAGAAATTACCTAGTGATATATCAGAGCGACATGTCCTGCTCTTAGATCCCGTTCTCGCTACTGGCAACTCAGCTAATCAAGCAATTGATCTACTGATACAGAAGGGAGTTCCAGAAGCACACATCATATTCCTCAACTTGATCTCTGCCCCTGAGGGAATTCACTGTGTTTGCAAACGATTCCCATCCTTGAAGATTGTTACTTCTGAGATTGATGTTGGATTGGACGAAAATTATCGTGTCATACCCGGTCTGGGGGAATTTGGCGATCGTTACTTCGGTACCGATGATTAA 1560 45.26 MIHTSELKRQISTPGHLSLNPPVSSVAFSSVRHRIIPPSTETIPIDYVMEAASGPHFSGLRLDGRLSSPPSSSTSSPAHRSSLSASFAQADANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQPYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPSDISERHVLLLDPVLATGNSANQAIDLLIQKGVPEAHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVGLDENYRVIPGLGEFGDRYFGTDD 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14813793 14824489 - ClCG05G011890.2 Cla05g01259 272749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01259 519 Gene3D - 94 301 IPR027417 -
Cla05g01259 519 MobiDBLite consensus disorder prediction 60 88 - -
Cla05g01259 519 CDD PRTases_typeI 375 490 IPR000836 -
Cla05g01259 519 ProSiteProfiles UvrC family, homology region profile. 204 287 IPR001162 GO:0009381
Cla05g01259 519 CDD UMPK 100 298 IPR000764 -
Cla05g01259 519 Pfam Phosphoribulokinase / Uridine kinase family 100 286 IPR006083 GO:0005524|GO:0016301
Cla05g01259 519 PRINTS Uridine kinase signature 128 139 - -
Cla05g01259 519 PRINTS Uridine kinase signature 98 115 - -
Cla05g01259 519 PRINTS Uridine kinase signature 230 240 - -
Cla05g01259 519 PRINTS Uridine kinase signature 244 255 - -
Cla05g01259 519 PRINTS Uridine kinase signature 173 188 - -
Cla05g01259 519 PRINTS Uridine kinase signature 266 279 - -
Cla05g01259 519 SUPERFAMILY PRTase-like 301 518 IPR029057 -
Cla05g01259 519 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 53 516 IPR029930 GO:0004849|GO:0044206
Cla05g01259 519 MobiDBLite consensus disorder prediction 65 88 - -
Cla05g01259 519 PANTHER URIDINE KINASE 53 516 - -
Cla05g01259 519 TIGRFAM udk: uridine kinase 97 298 IPR000764 -
Cla05g01259 519 Pfam Uracil phosphoribosyltransferase 316 517 - -
Cla05g01259 519 Gene3D - 302 517 IPR029057 -
Cla05g01259 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 291 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01259 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 924.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00768 Cla-Chr4:22790320 Cla05g01259 Cla-Chr5:14813793 2.34E-17 dispersed
Cla05g01259 Cla-Chr5:14813793 Cla09g02102 Cla-Chr9:38572131 0 dispersed
Cla05g01259 Cla-Chr5:14813793 Cla05g02359 Cla-Chr5:35168064 1.18E-15 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla11g00360 . 73 557 PRT Gene Family AT2G16570 85.2 6.1e-243 837.0
Cla11g00360 . 73 557 PRT Gene Family AT4G34740 86.0 1.6e-243 839.0
Cla11g00360 . 28 530 PRT Gene Family AT4G38880 70.4 1.7e-199 692.6
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla01g00375 . 6 104 PRT Gene Family AT4G22570 82.8 5.4e-44 173.7
Cla10g00278 . 5 95 PRT Gene Family AT4G22570 85.7 1.5e-41 165.6
Cla08g01342 . 11 100 PRT Gene Family AT4G22570 78.9 2.2e-37 151.8
Cla01g00375 . 1 96 PRT Gene Family AT4G12440 84.4 8.7e-41 162.9
Cla10g00278 . 1 95 PRT Gene Family AT4G12440 82.1 1.8e-38 155.2
Cla08g01342 . 4 99 PRT Gene Family AT4G12440 78.1 3.4e-37 151.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla08g00735 . 1 186 PRT Gene Family AT1G71750 65.0 1.8e-69 259.2
Cla09g02102 . 95 513 PRT Gene Family AT1G55810 88.8 3.1e-221 764.6
Cla05g01259 . 56 519 PRT Gene Family AT1G55810 73.5 1.5e-199 692.6
Cla09g02102 . 110 522 PRT Gene Family AT3G27440 76.1 1.6e-184 642.5
Cla05g01259 . 117 519 PRT Gene Family AT3G27440 75.4 9.2e-180 626.7
Cla05g01259 . 41 519 PRT Gene Family AT3G27190 86.0 9.4e-245 842.8
Cla09g02102 . 95 512 PRT Gene Family AT3G27190 81.1 3.6e-204 708.0
Cla04g00768 . 3 291 PRT Gene Family AT3G53900 65.4 2.4e-105 379.0
Cla09g02102 . 73 513 PRT Gene Family AT4G26510 84.0 4.9e-222 767.3
Cla05g01259 . 48 519 PRT Gene Family AT4G26510 75.8 7.3e-210 726.9
Cla05g01259 . 45 519 PRT Gene Family AT5G40870 87.0 9.5e-245 842.8
Cla09g02102 . 95 515 PRT Gene Family AT5G40870 79.6 1.2e-202 703.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g01259 Cla_Chr05 FPKM 0.089297 0.432878 7.950093 7.659461 0.54705 1.728705 0.811715 2.879107 3.929816 3.836161