Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01264 ATGGTTCAACCGACAAATCCATCCAAATTGCGATGGGGGGAGCTTGAAGACGACGACGGGGATCTTGATTTTCTTCTTCCGCCAAAGCAAATTATCGGGCCAGACGAAAATGGGTTGAAGAAAATTGTCGAGTATCAGTTTAACGAAGATGGTAACAAGGTCAAAATCACAACGACCACTCGTACACGCAAGCTTGCCCATGCTCGCCTTAGTAAACATGCCGTGGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTCCATGAAGATGTTGGCAGTCGGCTCACTATGGTCTCCACCGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGGTTGTCTTGTGTATTGAGTACTTCAAATTGTCAAATTTTGTTTTTGTATCCTCTCAAACCAGAGGAGCCCAAGGTTGCTGGAGACCCGCTAGCTCAACTTGGTAAAGGTGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCACCACAAGCTGATGGATTGGATAAGCCTGTTGCACCAGAGGCTACAACTGCTGCTCCTGGTGCAACGAAGGGAGCATATGTTCCTCCAGGTATGAGAGCAGGGGCGGAGAGGACTGGAACTGACATGAGGCGCAGAAATGATGAAAACTCTGTTCGTGTTACCAACCTTTCAGAGGACACTAGAGAGCCTGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGGTTTGGTTTTGTAAACTTTGTGAATCGCGAGGATGCACAAAGATCAATTAACAAGCTTAATGGATATGGTTACGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCGAGTTAA 918 48.47 MVQPTNPSKLRWGELEDDDGDLDFLLPPKQIIGPDENGLKKIVEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGLSCVLSTSNCQILFLYPLKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQADGLDKPVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAS 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14961372 14963152 + ClCG05G011940.2 Cla05g01264 272754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01264 305 Gene3D - 196 305 IPR012677 -
Cla05g01264 305 Pfam Eukaryotic translation initiation factor 3 subunit G 31 174 IPR024675 -
Cla05g01264 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 292 IPR000504 GO:0003723
Cla05g01264 305 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 304 - -
Cla05g01264 305 SUPERFAMILY RNA-binding domain, RBD 222 304 IPR035979 GO:0003676
Cla05g01264 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 302 IPR000504 GO:0003723
Cla05g01264 305 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 304 - -
Cla05g01264 305 SMART rrm1_1 225 298 IPR000504 GO:0003723
Cla05g01264 305 PIRSF Transl_init_eIF-3_RNA-bind 1 305 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cla05g01264 305 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 304 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cla05g01264 305 CDD RRM_eIF3G_like 225 300 IPR034240 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01230 Cla-Chr4:27402168 Cla05g01264 Cla-Chr5:14961372 0 dispersed
Cla05g01264 Cla-Chr5:14961372 Cla02g00613 Cla-Chr2:6731074 3.79E-06 dispersed
Cla05g01264 Cla-Chr5:14961372 Cla11g00125 Cla-Chr11:1608079 1.11E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01264 K03248 - csv:101207022 533.487