Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01317 ATGGAGCAAGGATCTGGGATTTCCACTCCTTCCCATCCTTCTCAGCTCTCGCGGGCATGGCTTACAAGGAATATAATACTTGCATACCAAAGTTTTGGAGTAGTGTATGGAGATTTGAGCACTTCACCCCTCTACGTTTACTCAAGTACATTTGCGGGGAAGTTGCAGAAACATCGAACTGAGGAAGTAGTATTTGGTGCATTCTCCTTGATCTTCTGGACTTTTACTCTGATACCATTACTAAAGTATGTTTTCATTGTATTGAGCGCAGATGACAATGGTGAAGGAGGAACCTTTGCTCTTTACTCCCTGCTCTGCCGACATGCTAAGTTGAGTTTACTTCCCAACCAACAAGCAGCTGATGAGGAGCTCTCAGCATACAGATATGGTCCATCTTCTCATGCAGTAGCCCCTTGTCAACTAAAAAGGTTTTTGGAAAGGCATAAAACACTTAGGACGATCTTACTTCTTGTCGTATTATTTGGTGCTTGCATGGTCATTGGTGATGGAGTGCTAACTCCTGCAATTTCAGTTCTATCCTCAGTTTCAGGTTTACAAGTTACTGAAGCAAAATTGACCAACGGGACACTCCTTTTGATTGCTTGTGCCATATTGGTTGGTCTGTTTGCTCTGCAGCATTGTGGCACCCATAAGGTTGCATTTATGTTTGCTCCAATAGTTATCATCTGGTTGTTGTCAATTTTCTCCATTGGTCTGTACAACATAATACATTGGAACCCAAGTATTATTCGTGCAATTTCCCCTCATTATGTTATCAAGTTCTTACAAATCACTGGTAAAGATGGTTGGCTTTCTCTCGGAGGGGTTCTTCTGGCCATAACTGGTACTGAGGCGATGTTTGCAGATCTTGGTCATTTCACGGCTTTGTCAATAAGGATTGCATTTGCGTTTGTTATCTACCCTTGTTTGGTAGTACAATACATGGGTCAAGCTGCCTTTCTGTCTAAGAACCTTGATTTGTTTCCAAACAGTTTTTATGACTCGATACCTGATCCTGTATTTTGGCCTGTTTTTGTTATTGCCACCCTTGCAGCTATTGTGGGGAGCCAGGCTGTCATTACTGCTACTTTCTCTATTGTCAAACAATGCCATGCCCTTGGTTGCTTTCCAAGAGTAAAAGTTGTCCACACCTCTAAACACATATATGGGCAGATCTACATCCCAGAAATAAACTGGATATTAATGATCCTCACTCTTTCCATTACAATAGGGTTTCAAGATACGACACTGATCGGAAATGCTTATGGACTCGCCTGCATGACAGTTATGTTCATAACAACATTTCTTATGGCACTTGTCATAGTATTCGTTTGGCAAAAAAGTATCCTGCTAGCCGCACCTTTTCTCATCTTCTTCTGGTCTGTCGAGGGTGCCTACTTATCAGCAGCAATCATAAAAGTGCCTCAAGGAGGGTGGGTCCCGCTTGTGCTATCAGCCTTTTTTATGATAGTTATGTTTGTCTGGCACTATGGCACTCGCAAGAAGTACAACTTTGATCTACACAATAAAGTTTCACTGAAGTGGTTGCTTGGACTAGGCCCTAGCCTTGGTATAGTTCGTGTCCCTGGGATTGGCCTCATATACTCGGAATTGGCGACAGGAGTACCCGCAATATTTTCTCACTTTGTGACAAATCTCCCTGCATTTCACAAGGTTTTAGTGTTTGTTTGTGTAAAGTCTGTTCCAGTTCCATATGTCTCTCCCGAAGAACGTTTTCTGATTGGGAGAGTCTGTCCTAGACCATATCGCATGTATCGGTGCATAGTGAGATATGGCTACAAGGACATTCAGAAGGATGATGGGGACTTTGAGAACCAACTGATACTAAACATTGCAGAATTCATTCAAATGGAGGCAGAGGAACCACAATTCTCAAGCTCTGAAAGTTCTTCAGTTGATGGGAGGATGGCAGTAATAAGCACTCGGAGTATACAATCAAGCTTGAGTTTAATAGTGTCAGGGCATGAAGAAATCGGTACCAGCAACTCCATCTATAGCAGCAAATCTGCCACACTCCAAAGTTTACGATCTGTGTATGAGGATGAGAATCCACAACTAAGAAGGCGCCAAGTGAGGTTTCAGCTATCTCCCAGCCCTTCAATGGACCCTAGAGTTAGGGAAGAATTAATAGACTTGATCCAAGCCAAAGAAGCGGGTGTAGCATATATAATGGGGCACTCATATGTGAAGGCCAGAAGATCTTCATCGTATTTGAAGAAGCTTGTGATAGATATCGGATACTCGTTCCTCCGAAAGAACTGCAGAGGCCCGCTGTTGGCAGCAGAGGGTGACACAACACAACAGCATGATATTCAGATCTGTGGGGTAGCATCTGATCTGAAATTGGCTGTAGGCATGGGTAGGTGCTTCTTCTCACTTGCAATGCAAACAGGAAAAGGTTTTGGAGTTGGACATCCCTTTTTTACATCTTCTGTAATCTACTTGTAG 2469 42.93 MEQGSGISTPSHPSQLSRAWLTRNIILAYQSFGVVYGDLSTSPLYVYSSTFAGKLQKHRTEEVVFGAFSLIFWTFTLIPLLKYVFIVLSADDNGEGGTFALYSLLCRHAKLSLLPNQQAADEELSAYRYGPSSHAVAPCQLKRFLERHKTLRTILLLVVLFGACMVIGDGVLTPAISVLSSVSGLQVTEAKLTNGTLLLIACAILVGLFALQHCGTHKVAFMFAPIVIIWLLSIFSIGLYNIIHWNPSIIRAISPHYVIKFLQITGKDGWLSLGGVLLAITGTEAMFADLGHFTALSIRIAFAFVIYPCLVVQYMGQAAFLSKNLDLFPNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLSITIGFQDTTLIGNAYGLACMTVMFITTFLMALVIVFVWQKSILLAAPFLIFFWSVEGAYLSAAIIKVPQGGWVPLVLSAFFMIVMFVWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQKDDGDFENQLILNIAEFIQMEAEEPQFSSSESSSVDGRMAVISTRSIQSSLSLIVSGHEEIGTSNSIYSSKSATLQSLRSVYEDENPQLRRRQVRFQLSPSPSMDPRVREELIDLIQAKEAGVAYIMGHSYVKARRSSSYLKKLVIDIGYSFLRKNCRGPLLAAEGDTTQQHDIQICGVASDLKLAVGMGRCFFSLAMQTGKGFGVGHPFFTSSVIYL 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16070873 16081146 - ClCG05G012520.2 Cla05g01317 272807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01317 822 PANTHER POTASSIUM TRANSPORTER 4 21 767 - -
Cla05g01317 822 Pfam K+ potassium transporter 29 602 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cla05g01317 822 TIGRFAM kup: potassium uptake protein 27 763 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cla05g01317 822 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 21 767 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00401 Cla-Chr3:4595247 Cla05g01317 Cla-Chr5:16070873 0 dispersed
Cla03g00402 Cla-Chr3:4600153 Cla05g01317 Cla-Chr5:16070873 0 dispersed
Cla05g01317 Cla-Chr5:16070873 Cla07g00469 Cla-Chr7:6536596 0 dispersed
Cla05g01317 Cla-Chr5:16070873 Cla09g01844 Cla-Chr9:36099892 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01317 K03549 - csv:101208973 1464.9