Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01333 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTTGACGCCGACCATGATGACTCCTCTTCTTGGTCCAGAACCAACCACCACACCGACGACGCCATCGCCATTTCCGCCGCCGGCTCCATTTCCTCCTTCAAATCCATCCTCGAATCCGACTGGTATATCAACTCTACTACTCCTCTTAATCCTTCTCACCAAGATTTCCATTCCCTTTCTTCTCACCCCGACATTCGAGACCTTCCTTTCTCCTCCAATCCTTCTGATAACTTCCTCTTACACCCTATAGATTCCTCCTCTTCTTGCTCTCCTTCTCACGCTTTTGCTCTCGATCCTTCCCATTCCCACTCCAGCTTGCCTCCTCACAAATCATCTTGTTTCTCTTCTCTTCTTAACGTTGTCTGCAGCAATAATTTTGATAATGCCTTCGATTTAGGCGGTGAGAGTGGTCTGCTTGGATCTTACCCAGGGAACCAAGCTTCCAATTCCTCCGTTTTGATGGGATTCACTGGCATTTCCTCTCTTCCTCAAATCGGTAATCAGGAGCTCAGCTTAAACAACTCGGAGTTTCCGGCGACTCGGTTGCTTCCGGTCGCCGATAACCCTCCTGCATTCGGAGCTGGATTTAATCCGGCGGCTGCTTTCGAGAGCTACGATGCCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTCCCGCAGGTCGGTGCGCAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGACCTGATAAACTAGAGAGTTTGGAGGTTTCGGGTTTTAAATTAGGAGAAGGCTCAATGTGGACGCCGAATTTGGAGAGCCTGAGGAAGATGACCGGCGACGAGGACATTGAGGACGGCAGCGTGGATGTTTCTCGCTTGAATTACGATTCCGACGAACCCAATGAGTATAATAAGCAAGAGGACAATGTTAACACTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACGGTAACTGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAAAATCTCATGGCAGAGCGGCGGCGGAGAAAGAAACTGAATGATAGACTTTACATGCTTAGGTCCGTGGTACCCAAGATAAGCAAGATGGATAGAGCTTCAATACTTGGAGACGCCATTGACTATTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTCGAGTCTACTCCTCCTGGTTCTTTGTTGCAGCCCTCTGCGAGCTTTCACCCTTTGACGCCGACGCTGCCAACTCTTCCCTGTCGTGTCAAAGAGGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAATACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCATCATGAGGGCTCTGGATAACCTTGGCTTGGACATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTAGACGTCTTTCGCGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTGCCTGAGCAAATAAAAGCAGTGCTATTGGATTCAGCTGGTTTACATGGCATTATATAA 1617 49.78 MLPKSTGILWLDADHDDSSSWSRTNHHTDDAIAISAAGSISSFKSILESDWYINSTTPLNPSHQDFHSLSSHPDIRDLPFSSNPSDNFLLHPIDSSSSCSPSHAFALDPSHSHSSLPPHKSSCFSSLLNVVCSNNFDNAFDLGGESGLLGSYPGNQASNSSVLMGFTGISSLPQIGNQELSLNNSEFPATRLLPVADNPPAFGAGFNPAAAFESYDACGNALFQNRSKVLRPLEVFPQVGAQPTLFQKRAAHRVGSAGPDKLESLEVSGFKLGEGSMWTPNLESLRKMTGDEDIEDGSVDVSRLNYDSDEPNEYNKQEDNVNTKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLQPSASFHPLTPTLPTLPCRVKEELCPSSLSSPNTQPARVEVRVREGRAVNIHMFCSRKPGLLLSIMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGII 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17163333 17166430 - ClCG05G012690.1 Cla05g01333 272823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01333 538 MobiDBLite consensus disorder prediction 305 348 - -
Cla05g01333 538 SMART finulus 353 402 IPR011598 GO:0046983
Cla05g01333 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Cla05g01333 538 CDD ACT_UUR-ACR-like 467 527 - -
Cla05g01333 538 ProSiteProfiles ACT domain profile. 466 538 IPR002912 -
Cla05g01333 538 PANTHER BHLH TRANSCRIPTIONAL FACTOR 108 537 - -
Cla05g01333 538 Coils Coil 390 410 - -
Cla05g01333 538 CDD bHLH_AtAMS_like 350 414 - -
Cla05g01333 538 SUPERFAMILY ACT-like 465 527 IPR045865 -
Cla05g01333 538 Gene3D - 341 410 IPR036638 GO:0046983
Cla05g01333 538 MobiDBLite consensus disorder prediction 318 340 - -
Cla05g01333 538 Pfam Helix-loop-helix DNA-binding domain 354 396 IPR011598 GO:0046983
Cla05g01333 538 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 108 537 - -
Cla05g01333 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 415 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01776 Cla-Chr1:32712626 Cla05g01333 Cla-Chr5:17163333 2.38E-37 dispersed
Cla05g01333 Cla-Chr5:17163333 Cla08g01184 Cla-Chr8:24732139 3.04E-37 dispersed
Cla11g00562 Cla-Chr11:6362493 Cla05g01333 Cla-Chr5:17163333 9.34E-11 dispersed
Cla05g01333 Cla-Chr5:17163333 Cla03g00378 Cla-Chr3:4383133 6.77E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61090 PF00010 HLH 2.20E-09 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01333 - - bhj:120082707 943.725