Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01339 ATGGCCATCTCTGAAACTCAGTTCCCTTCTTCTCTCATCCCTAATTTCCTCTACTCCTCTTCTGCCATTCCATTCCACAAGATTCTCCGCTCCAATCTTCCTTCTGAATCGCCATCTCCGAGCCTCGAATCCTCCACTTCGATGAAGGCCTTCGCGGTTCCTTCTCCCACTGAACCGAGCAAGAAATTGGAGATGTATTCGCCGGCTTTCTACGCCGCCTGTGCCGTCGGTGGAAGCCTCAGCTGCGGTCTCACTCACATGACCGTCACTCCGCTCGATCTCGTCAAGTGTAATATGCAGTTAGAGGGGGTAGCTACGTCGAGAATTTTGACACCGAGCGTTGTGTTGCAGAAGCTTGATCTTATAGTTTTACGAGTCGTTTTAGAGTTTTACATTCGATCTGTTGCAAGGTCTATTGACCCGGTGAAATACAAGAGCATTTCATCTGGTTTTGGAATTTTGCTAAAGGAGCAAGGAATCAGGGGGCTGTTTAGGGGTTGGGCGCCAACACTACTAGGTTACAGTGCTCAGGGTGCTTGCAAGTACGGCATCTACGAATTCTTTAAGAAATACTATTCCGATATAGTCGGTCCTGAGTATGCAGCAAAGTACAAGACATTGATCTATCTTGCTGGTTCTGCGTCTGCTGAAGTGATTGCAGATGTTGCACTTTGCCCCTTTGAAGCTGTTAAAGTTAGAGTTCAGACACAGCCAGGTTTTGCCAGAGGTTTGTCAGATGGCCTTCCCAAATTTGTTAGATCGGAAGGTGCTCTTGGGTTGTATAAGGGTATTGTTCCTCTGTGGGGACGTCAAATCCCATATACAATGATGAAGTTTGCAACATTTGAGAACCTGGTGGAACTCATATACAAGCATGTCATCCCCAAGCCAAAGAACGAATGCAGCAGCCCCTTGCAACTCGGCGTCAGCTTTGCTGGTGGATATATTGCCGGTGTTTCTTGTGCTATAGTTTCTCATCCTGCGGATAATCTTGTCTCCTTTCTCAATAATGCTAAAGGGGCTACCGTTGGTGAGGCAGTTCAGAAGCTTGGATTATGGGGTCTCTTCACACGAGGGCTGCCTCTACGCATAGTGATGATTGGAACCCTCACTGGAGCTCAGTGGGTTATCTATGACGCATTCAAAGTTTCTGTGGGATTGCCAACTACCGGTGGGGTTGCCCCTCCCATTGCTGCATCCCCAGAACATACACATACAACTGCGAGTGCGTAG 1233 47.93 MAISETQFPSSLIPNFLYSSSAIPFHKILRSNLPSESPSPSLESSTSMKAFAVPSPTEPSKKLEMYSPAFYAACAVGGSLSCGLTHMTVTPLDLVKCNMQLEGVATSRILTPSVVLQKLDLIVLRVVLEFYIRSVARSIDPVKYKSISSGFGILLKEQGIRGLFRGWAPTLLGYSAQGACKYGIYEFFKKYYSDIVGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFATFENLVELIYKHVIPKPKNECSSPLQLGVSFAGGYIAGVSCAIVSHPADNLVSFLNNAKGATVGEAVQKLGLWGLFTRGLPLRIVMIGTLTGAQWVIYDAFKVSVGLPTTGGVAPPIAASPEHTHTTASA 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17375930 17381427 + ClCG05G012750.2 Cla05g01339 272829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01339 410 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 5 106 IPR044677 GO:0005315|GO:1990547
Cla05g01339 410 SUPERFAMILY Mitochondrial carrier 71 380 IPR023395 -
Cla05g01339 410 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 288 IPR018108 -
Cla05g01339 410 Gene3D Mitochondrial carrier domain 70 385 IPR023395 -
Cla05g01339 410 ProSiteProfiles Solute carrier (Solcar) repeat profile. 69 191 IPR018108 -
Cla05g01339 410 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 137 400 IPR044677 GO:0005315|GO:1990547
Cla05g01339 410 Pfam Mitochondrial carrier protein 208 292 IPR018108 -
Cla05g01339 410 Pfam Mitochondrial carrier protein 71 193 IPR018108 -
Cla05g01339 410 PANTHER MITOCHONDRIAL PHOSPHATE TRANSPORTER 5 106 - -
Cla05g01339 410 PANTHER MITOCHONDRIAL PHOSPHATE TRANSPORTER 137 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00764 Cla-Chr1:8877671 Cla05g01339 Cla-Chr5:17375930 0 dispersed
Cla02g00337 Cla-Chr2:3289846 Cla05g01339 Cla-Chr5:17375930 5.22E-102 dispersed
Cla05g01339 Cla-Chr5:17375930 Cla06g01777 Cla-Chr6:31212131 8.95E-180 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01339 K15102 - csv:101203018 638.647