Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01378 ATGCCTCGAATATGCTCCTGCAGCAACAATATTGAGAGAAAGGTTTTAAACTATTCTGAATTAATTTCATGTCTTCTCGTGGCTGAACAAAATAATGAGCTATTAATGAAGAACCATGAATCTCGACCAACTGGAACAACACCATTCCCTGAAGTGAATGCTGTAAATTTTAATAATCGTGGTCGAGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGACCGTGGCAGAGGAAGAAATAGTTATTATTTTCGTGGTGGTCATTCTAATCATCCAAATTTCAAAAGAACCACCCGAAATGATGATCATAAAGGAAAAGCTCCACAAGCAAATCAATTACCAGATGCATTTATAGATGCAAAGAAAGTAACTAAATTGCATATACCTGTTGCAAATGTTTCGTCGAAAATTGATATCCCAACACAGCAAGTTGTCACTAATGAATCTGGAACACGCCAGAAGCGTGGTAGACCAGTGGGTTCCAAAGATAAAAATCCTCGAAAAAGAAAAATAAACGATAATAAAAAAGACTTGGTTGGGGATGTAAATATCCACGAAGAAACCCTAAACATGACTAATAATACAATTAGTGAAGAAGGTGAAATACCTAAAGATAATAATGAAATTTCAATTAATTATGTCATGATAGGGAAAAGATGGAACCGAACTCATGTAATTATTGATAACATTTTTGCATATAATGTTGCACTTGATATTATATCTGAAAATGAAGATCCTGAACCAAAATCTGTTGAAGAATGTCAACATAGAAATGATTGGCTTCGGTGGAAAGAAGTAATCGAGGCAGAATTAAACTCACTTTCAAAACGCCAAGTTTTTGGACCAGTAGTCCAGACACCAAAAGGTGTCAAACCCATGGGATACAAATGGGTATTTGTGAGAAAAAGAAATGAAAATAATGAGATCACAAGATATAAAGCAAGACTAGTTGCACAAGATTCTGGATATTTATCTGATCCACATAAAGCTAGATCTCAAACAGAAGTGGCCCTCGCTGTCTTCGGAGTTTTTCCAGTTTCCTCTTCGAATCGGTTGCGTTCAATTCCGCTCGACGCTCGTGGAGGTTCTATTACATCGACGATGGGAAGGCGATCCTTATGGGTTGCACTTCTTGTCTTTTCTCTTCTTCTTTCTCTGCGACCCCACACAGTTTCTTCCACTCTTCCTCTTCAATCATTGATTCAGGGTTCTAAAGATTCTGCCATTGAAAGTACTCCAGAGCAGGATTGGAACAATGCTCATGAGGTACATTGCTCAAGAGAAAGGAGTAGGGCGGCGTGGAAAATAATTGAGGAGTATCTAATGCCCTTTGTGGAAAAAAAGAAATACAAGATTTCTACTAAGTGTAGACTTCACCCTGATAATGATATGTTCAGAGATCAAGAACAGCACAAGAGCCATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAGAAAAAGATTCTACGAAGAAAAGTATCTCGATCAGCACTTTGACAATAGACACTATAATTTGCTCAATGTGAGTCGAAGCAGGTGCTTGGCAGATCTTTGTGGTGCATTGCACTGCGACCATGTGATAGATACAGTATCACCGAAAAGTAAATGCAATCCTGCTGCTGCCGCAAGAAATAAACATATGTGTGAGGTGACATCTGAAGATCTACAGATTTCTTCTTTATTTGCTCATAATTCACCACACTTGAACGATTGTTAA 1722 38.39 MPRICSCSNNIERKVLNYSELISCLLVAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRGRGRGRGRGRGRDRGRGRNSYYFRGGHSNHPNFKRTTRNDDHKGKAPQANQLPDAFIDAKKVTKLHIPVANVSSKIDIPTQQVVTNESGTRQKRGRPVGSKDKNPRKRKINDNKKDLVGDVNIHEETLNMTNNTISEEGEIPKDNNEISINYVMIGKRWNRTHVIIDNIFAYNVALDIISENEDPEPKSVEECQHRNDWLRWKEVIEAELNSLSKRQVFGPVVQTPKGVKPMGYKWVFVRKRNENNEITRYKARLVAQDSGYLSDPHKARSQTEVALAVFGVFPVSSSNRLRSIPLDARGGSITSTMGRRSLWVALLVFSLLLSLRPHTVSSTLPLQSLIQGSKDSAIESTPEQDWNNAHEVHCSRERSRAAWKIIEEYLMPFVEKKKYKISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYNLLNVSRSRCLADLCGALHCDHVIDTVSPKSKCNPAAAARNKHMCEVTSEDLQISSLFAHNSPHLNDC 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18464888 18472966 + ClCG05G013160.2 Cla05g01378 272868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01378 573 MobiDBLite consensus disorder prediction 95 109 - -
Cla05g01378 573 MobiDBLite consensus disorder prediction 156 177 - -
Cla05g01378 573 ProSitePatterns Zinc finger C2H2 type domain signature. 483 504 IPR013087 -
Cla05g01378 573 PANTHER ZINC FINGER PROTEIN-RELATED 378 554 - -
Cla05g01378 573 MobiDBLite consensus disorder prediction 143 177 - -
Cla05g01378 573 MobiDBLite consensus disorder prediction 39 54 - -
Cla05g01378 573 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 378 554 - -
Cla05g01378 573 MobiDBLite consensus disorder prediction 39 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00751 Cla-Chr1:8779600 Cla05g01378 Cla-Chr5:18464888 3.81E-34 transposed
Cla02g00932 Cla-Chr2:14587069 Cla05g01378 Cla-Chr5:18464888 3.37E-42 transposed
Cla02g01291 Cla-Chr2:26897204 Cla05g01378 Cla-Chr5:18464888 2.36E-25 transposed
Cla03g00836 Cla-Chr3:11067840 Cla05g01378 Cla-Chr5:18464888 4.03E-21 transposed
Cla03g01290 Cla-Chr3:27599542 Cla05g01378 Cla-Chr5:18464888 2.77E-38 transposed
Cla05g01283 Cla-Chr5:15305483 Cla05g01378 Cla-Chr5:18464888 1.59E-38 transposed
Cla06g01159 Cla-Chr6:24681128 Cla05g01378 Cla-Chr5:18464888 1.71E-17 transposed
Cla08g00037 Cla-Chr8:1087747 Cla05g01378 Cla-Chr5:18464888 5.02E-48 transposed
Cla08g00354 Cla-Chr8:8873436 Cla05g01378 Cla-Chr5:18464888 2.24E-34 transposed
Cla09g01404 Cla-Chr9:25799414 Cla05g01378 Cla-Chr5:18464888 1.27E-19 transposed
Cla10g00871 Cla-Chr10:19982159 Cla05g01378 Cla-Chr5:18464888 1.11E-33 transposed
Cla05g01378 Cla-Chr5:18464888 Cla06g01722 Cla-Chr6:30737609 1.34E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01378 - - csv:101219582 358.221