Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01408 ATGGGGAAGAACGAATTTCTAACCCCTAAAGCAATCGCAAACAGAATCAAGGCAAAAGGGCTACAGAAGCTGAGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAGAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCACCAGCGCCAGATGCAGATCTTTGGCCAAAATCCCCATCGTATCGTGGAAGGCTACTCTGAAGAGTTTGAGAGTTCTTTCATGGAGCACATTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTGGTCTATAATGAATACATTAATGACAGACATCATATTCATATGAATTCAACTCAGTGGGCTACTCTGACTGAGTTTGTAAAACATTTGGGTCGAACTGGGCAATGTAAAGTAGAGGAGACTCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCAGAGACGCTTTTTAAAGAGAGAATGAAGAATAAGAGGATGCGGGCCGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTGTATCTGTTGAGCCTTTGGAGGCTGAACAAACGAGAGAGTTGAAATTGGATAGTGGGGTTAAGCTAGGATTTGCTTTGGTAACATCAACAAAATTGAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGAAGAGACATATGAGACTGCGAAGGGGAAAGCTAAAGAGACTTCCAAAAACAGGATGGGTGGTGGTGGTCTGTCAGCTTTGGAGGCATTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATTATTGGCTTTGTGAGGGAATAACTGTAAAGATTATGAGCAAGGATTTGGCTGAGAAGGGATACTATAAACAGAAGGGAGTTGTACGAAAAGTGATTGATAAATATGTTGGAGAGATCGAAATGCTCGATGGCAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAGTAAGGATAGTTAATGGAGCGTATCGTGGATCAAATGCTAGGTTGTTAGGTGTTGACACTGATAAGTTTTGTGCTAAAGTGCAAATAGAGAAGGGTGTGTATGATGGAAGGATGCTTAAGGCTGTTGAATACGAAGATATTTCACGGAAGAAGAAACTTCACCCTTTTGGCTGGGTTTTCGCTACGCTCGACTCCATTTGCTGGAATTTTGAGGTTTGGGTTCTGCTGCTGCTGGCCTATTTCTTCGAAAAAGCTCGAATTTTTGTACTGATAGTGATGTCTATGAACAACAATAACCCGCCGAAGAGCCTTGGGGTGGCTTCTTCTTCGCCTTTTGGAAATTCTGGGATGGTTCCACCATCTATGGCAGCAAATTCCACATCATTTTCTCAGCCGCAAGCTCAAGCTCAATTAGGAGCTGGGTTTCAAAATCCATTTCCGCTGTGCACCGCTCAGGTTCTTGCTCAAGCTCAGTTAAAGGCTCACGCTCATGCCCAAGCTCAAGCACAGGCAGCTCACGCCCAGTTTCAAGCTCAGTTACAAGCTCAAGGGCTGTCCCTAACTCAGAGCCAGAATGTTGGTGGTGGGAACATGGGTTCGCCTTCACCAGGATTTTCCACACCAGGCCTTGCAGGTGTCAAGCGAATTCCTCAAAAGCCACCAGTTCGGCCTCCTATTCTTTCTCCTGGTACCACATTTTCGCCGTTGAAAACAATGGAAATTACGCCTGCTGCTCGTAAAAAGAAGCAGAAGCTGCCTGAGAAGCAGCTTCAAGATAAAGTTGCTGCAATCTTGCCCGAATCTGCTCTCTACACTCAGCTGCTTGAGTTTGAGTCTCGTGTTGATGCTGCTCTCGCAAGAAAGAAAGTTGACATCCATGAGGCGCTTAAAAACCCACCTTGCATTCAGAAAACTCTTCGAATTTATGTCTTCAACACATTTGCAAATCAAGTTAACACAATACCCAAAAAACCAAATGCCGATCCTCCTACCTGGACTCTTAAGATAATAGGTAGGATCTTGGAAGACGGGATAGATCCTGATCATCCTGGGGTGGTACAAAGATCAAACCCTTTGTACCCAAAATTTTCATCTTTCTTCAAGAGAGTAACCATTTCCTTGGACCAGAGGCTATATCCAGATAGTCACATCATAGTATGGGAGAATGCTCGATCACCTGCACCTCATGAGGGCTTTGAGGTGAAGAGAAAAGGAGATAAAGAATTTTCAGTTAACATTCGGTTAGAAATGAATTATATTCCAGAGAAATTCAAGTTGTCGCCTGCTTTGATGGAAGTTCTTGGTATTGAAGTTGATACTCGCCCAAGAATAATAGCTGCAATCTGGCATTATGTGAAGGCTAGGAAACTTCAGAATCCCAACGATCCATCTTTCTTTCATTGTGATCCACCTCTCCAGAAGGTATTTGGGGAAGACAAATTGAAATTTACCATGGTTTCACAGAGAATATCACAGCACTTGTTTCCTCCACAGCCTATACATCTGGAGCATAAAATTAAGCTTTCGGGGAATAGTCCAGCAGGTACAGCATGTTACGATGTGTTGGTCGATGTGCCTTTCCCAATTCACAGGGAATTGTCTGCTCTATTAGCCAATGCAGAGAAGAACAAGGAGATTGATGCATGTGATGAAGCAATTTGTACCGCTATAAGGAAAATTCACGAGCATCGACGGAGACGTGCATTTTTCCTTGGGTTCAGTCAGTCACCGGTGGAGTTTATTGATGCCTTGATTGAATCTCAAAGCAAGGATCTAAAACTTCTTGCAGGAGAAGCTAGTCGAAATGCTGAAAAGGAGCGACGATCAGATTTCTTCAATCAACCATGGGTTGAAGATGCTGTCATCCGGTACATAAATCGAAAACCAGCAACAGGCAGCGATGCACCTGGAAGTACATGA 2949 43.68 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFESSFMEHIKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPLASVSVEPLEAEQTRELKLDSGVKLGFALVTSTKLKEKGESSRVVFDEEETYETAKGKAKETSKNRMGGGGLSALEALMREEEMKKEKLNRKDYWLCEGITVKIMSKDLAEKGYYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAKVQIEKGVYDGRMLKAVEYEDISRKKKLHPFGWVFATLDSICWNFEVWVLLLLAYFFEKARIFVLIVMSMNNNNPPKSLGVASSSPFGNSGMVPPSMAANSTSFSQPQAQAQLGAGFQNPFPLCTAQVLAQAQLKAHAHAQAQAQAAHAQFQAQLQAQGLSLTQSQNVGGGNMGSPSPGFSTPGLAGVKRIPQKPPVRPPILSPGTTFSPLKTMEITPAARKKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKVDIHEALKNPPCIQKTLRIYVFNTFANQVNTIPKKPNADPPTWTLKIIGRILEDGIDPDHPGVVQRSNPLYPKFSSFFKRVTISLDQRLYPDSHIIVWENARSPAPHEGFEVKRKGDKEFSVNIRLEMNYIPEKFKLSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDPPLQKVFGEDKLKFTMVSQRISQHLFPPQPIHLEHKIKLSGNSPAGTACYDVLVDVPFPIHRELSALLANAEKNKEIDACDEAICTAIRKIHEHRRRRAFFLGFSQSPVEFIDALIESQSKDLKLLAGEASRNAEKERRSDFFNQPWVEDAVIRYINRKPATGSDAPGST 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19271088 19279325 + ClCG05G013440.2 Cla05g01408 272898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01408 982 Gene3D SWIB/MDM2 domain 759 844 IPR036885 -
Cla05g01408 982 ProSiteProfiles SWIB/MDM2 domain profile. 762 839 IPR003121 -
Cla05g01408 982 CDD KOW_KIN17 340 392 IPR041995 -
Cla05g01408 982 SMART swib_2 763 842 IPR019835 -
Cla05g01408 982 Gene3D - 338 393 IPR014722 -
Cla05g01408 982 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 532 975 - -
Cla05g01408 982 Coils Coil 154 183 - -
Cla05g01408 982 SUPERFAMILY SWIB/MDM2 domain 757 847 IPR036885 -
Cla05g01408 982 CDD SWIB_like 769 837 - -
Cla05g01408 982 Pfam KN17 SH3-like C-terminal domain 276 329 IPR041330 -
Cla05g01408 982 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Cla05g01408 982 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 532 975 - -
Cla05g01408 982 Coils Coil 257 277 - -
Cla05g01408 982 Pfam SWIB/MDM2 domain 766 837 IPR003121 -
Cla05g01408 982 SMART Kin17_mid_2 52 178 IPR019447 -
Cla05g01408 982 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Cla05g01408 982 Gene3D - 284 337 - -
Cla05g01408 982 Gene3D - 60 160 IPR038254 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01340 Cla-Chr1:26824138 Cla05g01408 Cla-Chr5:19271088 0 dispersed
Cla05g01408 Cla-Chr5:19271088 Cla09g01583 Cla-Chr9:31599162 0 dispersed
Cla05g01408 Cla-Chr5:19271088 Cla05g00256 Cla-Chr5:2343653 2.10E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61092 PF10357 Kin17_mid 4.50E-46 CL0123 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01408 K11650 - csv:101216251 1021.15