Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cla05g01424	ATGGAGAATTATCAGATGTTTTTCCCTTGCTCCAGCGGCGGCGATGGTGGCGGACGACTGTCGGCGTATCATCATGCCGACATGTCATCTGTTTCCGGGTCTGATATATTTGGGAATTTTCACGGCGGCGATATGGAGGTAAGTGGGGTTTTGGGGATGAAGACAGAGATGGATGCGGCGGCGGCGACGGCGGTGGAAGCGGACGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCAAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATACGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGATGCACGCATCAAGGATGCAATGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA	528	46.59	MENYQMFFPCSSGGDGGGRLSAYHHADMSSVSGSDIFGNFHGGDMEVSGVLGMKTEMDAAAATAVEADGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF	175

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
5	19800519	19803424	-	ClCG05G013630.1	Cla05g01424	272914

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cla05g01424	175	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	56	170	IPR044810	GO:0003700
	Cla05g01424	175	Gene3D	WRKY domain	79	155	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Cla05g01424	175	ProSiteProfiles	WRKY domain profile.	90	155	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cla05g01424	175	SMART	WRKY_cls	95	154	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cla05g01424	175	SUPERFAMILY	WRKY DNA-binding domain	87	154	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Cla05g01424	175	Pfam	WRKY DNA -binding domain	96	152	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cla05g01424	175	PANTHER	WRKY TRANSCRIPTION FACTOR 75-RELATED	56	170	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cla05g01424	Cla11g00902	CCT
	Cla05g01424	Cla11g00902	ECH

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cla05g01424	Cla-Chr5:19800519	Cla07g01463	Cla-Chr7:31931187	8.74E-61	dispersed
	Cla05g01424	Cla-Chr5:19800519	Cla07g00746	Cla-Chr7:20796642	4.80E-38	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	61094	PF03106	WRKY	3.50E-26	CL0274	Cla	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cla05g01424	-		-	csv:101219349	291.967