Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01434 ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCTAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 939 48.46 MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHLEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20201216 20202154 + ClCG05G013720.1 Cla05g01434 272924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01434 312 MobiDBLite consensus disorder prediction 285 312 - -
Cla05g01434 312 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cla05g01434 312 Pfam TCP family transcription factor 73 167 IPR017887 -
Cla05g01434 312 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 44 311 - -
Cla05g01434 312 MobiDBLite consensus disorder prediction 1 47 - -
Cla05g01434 312 MobiDBLite consensus disorder prediction 1 17 - -
Cla05g01434 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 44 311 IPR005333 GO:0003700
Cla05g01434 312 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01434 Cla-Chr5:20201216 Cla06g01596 Cla-Chr6:29505943 3.08E-38 dispersed
Cla05g01434 Cla-Chr5:20201216 Cla06g00182 Cla-Chr6:2119670 2.59E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61095 PF03634 TCP 3.70E-31 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01434 - - csv:101222902 488.034