Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01487 ATGAGCGTAGTAGGTTTTGATATTGGAAATGAGAATTGTGTTATTGCTGTGTCAAGGCAACGTGGTATCGATGTTCTGCTCAATGAGGAATCACAACGAGAGACCCCTGCAGTGATATGCTTTGGGGAAAAGCAGCGGTTTTTGGGTTCTGCGGGTGCTGCTTCTGCAACAATGAACCCAAGATCCACTATATCTCAGGTAAAGAGATTGATTGGACGTAACTTCAGTGAGCCAGATGTTCAAAAGGATCTCAATATGCTTCCTTTCAAAACATCTGAAGCCCTTGATGGCAGCATTTTGGTTCATGTGAAATACTTGGGGGAGACTCATACATTTACTCCAGTTCAGATCATGGCAATGCTCCTTGCACATTTGAGAGATGTAGCTGAGAAAAATTTGGGAGCACCATTTTCAGATTGTGTTATTGGTATTCCATCGTATTTTACAGATTTGCAGAGACGTTTATATTGGAATGCTGCTGCTATTGCTGGTTTAAAGCCTTTGAGACTCATGCATGACTGTACTGCAACAGCACTTAGCTATGGAATTTATAAAACAGATTTCTCAAGGACAGGTCCAATATATGTTGCATTTGTTGATATTGGTCACTGTGATACCCAGGTCTCCTTTGTATCATTTGAGCCTGGACATATGAGGATTATGTCACATACCTATGATAGAGATTTAGGAGGTAGAGACTTTGATGAGGTTCTATTCAGCCACTTTGTTGCAGAATTTAAGAAGAATTATGATATAGATGTAAATTCAAATGTCAAGGCTTCTATCAGATTGCGGGCAGCTTGTGAGAAGCTGAAGAAAGTTTTGAGTGCAAATTTGGAGGCACCTCTTAATATTGAATGCCTGATGGACGAGAAAGACGTTAAGGGGTTTATCAAAAGAGAAGAATTTGAAAAGCTTGCCTCTGGGTTACTGGAGAGGATTAGTATTCCCTGTACCAGAGCCTTAGCTGATGCAGGATTAACTGTAGAAAAAATCCATTCTGTTGAGCTTGTTGGATCAGGGTCAAGGATCCCTGCGATAACAAGGCTATTGAGTTCCGTATTTAAAAAAGAACCCAGTCGTAAACTTAATGCTAGTGAATGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCCATGCTTAGCCCAGTTTTCCGGGTCAGAGAATATGAGGTGTGTACTTCTCCTGAGGTTCAGGATTCATCCCCCTTCTCCATTGGCTTCTCGTCAGATGCAGGCCCAATTAGCTTAGGCTTAAATAATGTACTATTTCCCAAAGGCCAGCACATTCCAAGTACTAAAGTTCTATCATTCCAGCGCAACAGTTTATTCCACTTAGAAGCAGTTTATACTAATCTGGATGAACTACCTCCTGGCATGTCTTCAAAAATTGGTTGCTTTACAATTGGTCCTGTCCAAGGTTCAAACAACTCGAATTCAAGGGTTAAAGTCAGAGTTCAATTAAATATGAATGGCATTGTTACTGTTGAATCAGCTACACTTGTAGAGGATAATGTAGATGAACAAACGCCAAGGAGAGATGCTGCTCACTTGAACACAGAAAAAATGGAGACCGAGTTTGTTGATTCTTCCCATCCTGAGTCTGATGTTTCAAGAAAAGCTAGGAGCACAAGGAGGATTGATATACCAGTTAGTGAACATATATATGGTGGAATGACCAAGGCTGAGCTCTCAGAAGCCCAAGAAAGAGAGCTACAACTTGCCCAACAGGATAAAAATATGGAACAGGCCAAAAATAAGAAGAATGCTTTGGAGTCATATGTCTATGAGACGAGGAATAAGGTTTGGAATTGTAACTTTGGAAATGTTAAGCGTAGAGGTTTAAGTGGGGGAGTTCAGCTTTTCAACACATATCGGAGTTTCGCTAGTGATCAAGAGCGAGAAGGCATCTCCTCAAGCCTCCAGCAAACAGAGGAGTGGCTATATGAGGATGGAGACGATGAGACAGAGAGTGCTTATTCTTCCAAGTTAGATGACCTTAAGAAGGTTGTTTCTATTTCTGTCTTGGTGGATCCTATAATTAACCGATACGAAGATGAAGAAGCTAGAGCACAAGCTAAAGTGCATTTGTTAAAGCGTATTTCTGATTATAGGAACTCTGGGGATTCACTTTCACCTCAAGCTCGAGCGTTGATCCTTGAGGAGTGCGACAGAGCAGAGCAGTGGCTAACAGAGAAAAACGAACAACAAGAGTTGTTACCAAAAAACACTGACCCTTTACTATGGTCATGCGAGATCAGAACTCGGGAGGAGGATTTTGACAAGTATGATGCTTCTCTGTTTGATTTGTTGAAATCTAAGAAGTTTCTGGCATGCCAGAGGATCTTGGGACATGTGTCTTCCCATACACATTCAGGAGATTCCAAGGAACCAAACCATCACAATTCTTCTGATAACCACCATTCTTAA 2427 41.33 MSVVGFDIGNENCVIAVSRQRGIDVLLNEESQRETPAVICFGEKQRFLGSAGAASATMNPRSTISQVKRLIGRNFSEPDVQKDLNMLPFKTSEALDGSILVHVKYLGETHTFTPVQIMAMLLAHLRDVAEKNLGAPFSDCVIGIPSYFTDLQRRLYWNAAAIAGLKPLRLMHDCTATALSYGIYKTDFSRTGPIYVAFVDIGHCDTQVSFVSFEPGHMRIMSHTYDRDLGGRDFDEVLFSHFVAEFKKNYDIDVNSNVKASIRLRAACEKLKKVLSANLEAPLNIECLMDEKDVKGFIKREEFEKLASGLLERISIPCTRALADAGLTVEKIHSVELVGSGSRIPAITRLLSSVFKKEPSRKLNASECVARGCALQCAMLSPVFRVREYEVCTSPEVQDSSPFSIGFSSDAGPISLGLNNVLFPKGQHIPSTKVLSFQRNSLFHLEAVYTNLDELPPGMSSKIGCFTIGPVQGSNNSNSRVKVRVQLNMNGIVTVESATLVEDNVDEQTPRRDAAHLNTEKMETEFVDSSHPESDVSRKARSTRRIDIPVSEHIYGGMTKAELSEAQERELQLAQQDKNMEQAKNKKNALESYVYETRNKVWNCNFGNVKRRGLSGGVQLFNTYRSFASDQEREGISSSLQQTEEWLYEDGDDETESAYSSKLDDLKKVVSISVLVDPIINRYEDEEARAQAKVHLLKRISDYRNSGDSLSPQARALILEECDRAEQWLTEKNEQQELLPKNTDPLLWSCEIRTREEDFDKYDASLFDLLKSKKFLACQRILGHVSSHTHSGDSKEPNHHNSSDNHHS 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23738030 23743442 + ClCG05G014290.2 Cla05g01487 272977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01487 808 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 398 591 IPR029047 -
Cla05g01487 808 CDD HSPA4_like_NDB 2 381 - -
Cla05g01487 808 MobiDBLite consensus disorder prediction 789 808 - -
Cla05g01487 808 MobiDBLite consensus disorder prediction 786 808 - -
Cla05g01487 808 Gene3D - 5 374 - -
Cla05g01487 808 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Cla05g01487 808 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 624 687 IPR029048 -
Cla05g01487 808 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 396 556 IPR029047 -
Cla05g01487 808 Gene3D Actin; Chain A, domain 4 230 313 - -
Cla05g01487 808 Coils Coil 680 700 - -
Cla05g01487 808 Gene3D - 186 360 - -
Cla05g01487 808 PANTHER HSC70CB, ISOFORM G-RELATED 1 761 - -
Cla05g01487 808 Gene3D - 558 695 IPR029048 -
Cla05g01487 808 Coils Coil 564 593 - -
Cla05g01487 808 PRINTS 70kDa heat shock protein signature 478 494 - -
Cla05g01487 808 PRINTS 70kDa heat shock protein signature 394 413 - -
Cla05g01487 808 PRINTS 70kDa heat shock protein signature 332 348 - -
Cla05g01487 808 PRINTS 70kDa heat shock protein signature 140 160 - -
Cla05g01487 808 PRINTS 70kDa heat shock protein signature 363 383 - -
Cla05g01487 808 PRINTS 70kDa heat shock protein signature 30 42 - -
Cla05g01487 808 PRINTS 70kDa heat shock protein signature 2 15 - -
Cla05g01487 808 MobiDBLite consensus disorder prediction 524 543 - -
Cla05g01487 808 PANTHER HEAT SHOCK 70 KDA PROTEIN 16 1 761 - -
Cla05g01487 808 Gene3D - 38 113 - -
Cla05g01487 808 Pfam Hsp70 protein 3 671 IPR013126 GO:0005524|GO:0140662
Cla05g01487 808 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01487 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101219607 1338.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01487 Cla-Chr5:23738030 Cla09g00198 Cla-Chr9:1967576 4.65E-42 dispersed
Cla05g01487 Cla-Chr5:23738030 Cla04g00820 Cla-Chr4:23247541 2.96E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g507 Blo03g00559 . Bda07g00360 . . . . . . . Cma01g01133 Cma09g00950 . Car09g00863 . Cpe06g00765 Cpe02g00768 . . . . . . . . . . . . . . . . Cone14ag1142 Cone15ag1160 Lsi04g01203 . . . . . . . Bpe11g00547 . . Bma14g00339 . Cmo01g01184 Cmo09g00948 . . . Car16g00544 . . . . . . . . . Cla05g01487 . Cec05g1613 . Clacu05g1583 Cmu05g1486 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004049 1 5 1 1 1 1 2 3 1 1 1 1 2 1 1 2 1 2 2 2 1 1 1 1 1 1 1 3 2 0 44