Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01494 ATGCATGATTTCTGCTTCACAATCCCTTATGGATTGATTTTAGTTGGTGGTGGCATTTTTGGCTACCTCAGGAAGGGGAGCGCAGCATCGCTAGCTGGAGGTGTGGGTACTGGATTGGTTCTAATTCTGGCTGGATACTTGAGCCTTGGAGCCTTCAAGAAGAAGAAGAACTCCTATCTTGCTCTGATTCTTGAGACAGGCACAGAACTAGATACTGCTGCTACACCTTCCCATCAGATCAAATGCACACCATTACCCTCCATTGGGGCAGGGGAGGAGGGTGTCAGTACCTGGGACAAAGCTCAAGCAAGATACTCTAACCACCTCTCGCAAGAAACTCTTAACCACTTCTCCCATTATTGCAGTCTGTGTAAGATGGCAGAGGAGACTGTGGACAATTACTTGTTCTTTTGGTGCCCTTTTCCTCGGTCTTTGGCTCCAGCTCTTAAGTATCTTTGGCTTCAATATGATTTCTCGTTCTGA 483 46.79 MHDFCFTIPYGLILVGGGIFGYLRKGSAASLAGGVGTGLVLILAGYLSLGAFKKKKNSYLALILETGTELDTAATPSHQIKCTPLPSIGAGEEGVSTWDKAQARYSNHLSQETLNHFSHYCSLCKMAEETVDNYLFFWCPFPRSLAPALKYLWLQYDFSF 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24118177 24121152 + ClCG05G014360.2 Cla05g01494 272984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01494 160 PANTHER PROTEIN FATTY ACID EXPORT 5-RELATED 1 69 - -
Cla05g01494 160 Gene3D - 1 70 IPR044890 -
Cla05g01494 160 Pfam Transmembrane proteins 14C 6 64 IPR005349 GO:0016020
Cla05g01494 160 PANTHER TRANSMEMBRANE PROTEIN 14, 15 1 69 IPR005349 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01494 - - - csv:101213707 128.642
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00645 Cla-Chr4:20865504 Cla05g01494 Cla-Chr5:24118177 4.26E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g495 . . Bda07g00358 Bda09g00397 . Bpe08g01127 . . . . Cma01g01135 . . . . . Cpe02g00766 . . . . . . . . . . . . . . . . . . Lsi04g01207 . . . Blo07g00910 . Bda05g00726 . Bpe11g00543 . Bma07g01301 Bma14g00343 . Cmo01g01186 . . . . Car16g00546 . . . . . . . . . Cla05g01494 Cam05g1610 . Cco05g1639 Clacu05g1590 Cmu05g1493 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005657 3 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39