Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01516 GGGTGCCTCGTTTTGCATGCAGCCTCCACCCTCTCTCTCCTGCTGCCACACACACACACTCTCTCTCCCTCGCCGATCTCTCTCCTGTTTGGCTCTCTCTCTCTCGGTCTCTCTCCTTCGCCGGCACACTCTTTCGCTCGGCGTCTCGCTCGGCGTTTTCATCTCGTGACATCACTTTCTCTCTCGGGTCTCGCCGTCTCGCTTTCGCTAGACCCTCTCTCTCTCCCTCTCGGCAGTACGTTTCCCCCTCCCTTTCTCTCTCGATTTTACTCGGCCGGCAGCACCTCCTTAACATGCTTCCCTCTTAGCTACTCTCCCTCACGCCGCCGTTGTGCCGCTGCCGCCGGATTTCTCTCTCCGCCGCCACCGCTGCCTTTTTGCAATGATTCAGTCAGGGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGAAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTCATCACCTGTTGCCGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAATCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTTGTGCGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTAATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAACAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAGCATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGTGGGCTACAAGGATTCTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTGTCGCTGTTGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTCCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAAGGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTTGGGGACAAATGAGCCTCGTCATCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCATAGAAGTTGATACTGATGACAACGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGACAACATCACATTGGATCTCCGAAGAAGGTTGATGGAAGGTTGTACAAATAAAGCTTCCAAGGCCGCAAAATGGCGAAATCTTCAACTATACGAGGCTTTGGCAATTTTCTTTTGTTATGGTTCATTTTCTTTTCCAATTTTGTTATTATTATTATTTTTTTCTGAGAAG 4014 44.02 GCLVLHAASTLSLLLPHTHTLSPSPISLLFGSLSLGLSPSPAHSFARRLARRFHLVTSLSLSGLAVSLSLDPLSLPLGSTFPPPFLSRFYSAGSTSLTCFPLSYSPSRRRCAAAAGFLSPPPPLPFCNDSVRVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLSSPVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQLCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDSILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEASGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAEGVPELCPNSEWCAKQSLDTQSLGVQLSLLESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFPEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDKEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERLGTNEPRHHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSTPIEVDTDDNDPTLASFLNKLKRKKHQPSSGGDNITLDLRRRLMEGCTNKASKAAKWRNLQLYEALAIFFCYGSFSFPILLLLLFFSEK 1338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24750910 24776529 + ClCG05G014580.1 Cla05g01516 273006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01516 1338 Gene3D - 766 820 - -
Cla05g01516 1338 Pfam Myb-like DNA-binding domain 822 865 IPR001005 -
Cla05g01516 1338 Pfam Myb-like DNA-binding domain 663 708 IPR001005 -
Cla05g01516 1338 Gene3D - 660 711 - -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 186 205 - -
Cla05g01516 1338 ProSiteProfiles Myb-like domain profile. 658 710 IPR001005 -
Cla05g01516 1338 ProSiteProfiles Myb-like domain profile. 816 866 IPR001005 -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 894 988 - -
Cla05g01516 1338 CDD SANT 772 813 IPR001005 -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 930 953 - -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 1174 1189 - -
Cla05g01516 1338 SUPERFAMILY Homeodomain-like 695 765 IPR009057 -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 954 976 - -
Cla05g01516 1338 Gene3D - 823 869 - -
Cla05g01516 1338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 711 766 IPR017930 -
Cla05g01516 1338 CDD SANT 718 762 IPR001005 -
Cla05g01516 1338 Pfam Myb-like DNA-binding domain 719 780 - -
Cla05g01516 1338 SUPERFAMILY Homeodomain-like 655 711 IPR009057 -
Cla05g01516 1338 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 159 391 - -
Cla05g01516 1338 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 603 1221 - -
Cla05g01516 1338 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 389 594 - -
Cla05g01516 1338 SUPERFAMILY Homeodomain-like 766 862 IPR009057 -
Cla05g01516 1338 ProSiteProfiles Myb-like domain profile. 764 815 IPR001005 -
Cla05g01516 1338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 816 870 IPR017930 -
Cla05g01516 1338 ProSiteProfiles SANT domain profile. 714 763 IPR017884 -
Cla05g01516 1338 CDD SANT 823 866 IPR001005 -
Cla05g01516 1338 ProSiteProfiles Myb-like domain profile. 711 762 IPR001005 -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 1148 1213 - -
Cla05g01516 1338 SMART sant 505 659 IPR001005 -
Cla05g01516 1338 SMART sant 768 817 IPR001005 -
Cla05g01516 1338 SMART sant 662 712 IPR001005 -
Cla05g01516 1338 SMART sant 820 868 IPR001005 -
Cla05g01516 1338 SMART sant 715 764 IPR001005 -
Cla05g01516 1338 Gene3D - 715 765 - -
Cla05g01516 1338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 768 815 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01516 Cla-Chr5:24750910 Cla10g00707 Cla-Chr10:11074243 2.37E-07 dispersed
Cla05g01516 Cla-Chr5:24750910 Cla04g01239 Cla-Chr4:27505759 1.77E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61097 PF13921 Myb_DNA-bind_6 3.50E-11 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01516 K09422 - csv:101216287 1435.24