Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01516 | GGGTGCCTCGTTTTGCATGCAGCCTCCACCCTCTCTCTCCTGCTGCCACACACACACACTCTCTCTCCCTCGCCGATCTCTCTCCTGTTTGGCTCTCTCTCTCTCGGTCTCTCTCCTTCGCCGGCACACTCTTTCGCTCGGCGTCTCGCTCGGCGTTTTCATCTCGTGACATCACTTTCTCTCTCGGGTCTCGCCGTCTCGCTTTCGCTAGACCCTCTCTCTCTCCCTCTCGGCAGTACGTTTCCCCCTCCCTTTCTCTCTCGATTTTACTCGGCCGGCAGCACCTCCTTAACATGCTTCCCTCTTAGCTACTCTCCCTCACGCCGCCGTTGTGCCGCTGCCGCCGGATTTCTCTCTCCGCCGCCACCGCTGCCTTTTTGCAATGATTCAGTCAGGGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGAAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTCATCACCTGTTGCCGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAATCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTTGTGCGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTAATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAACAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAGCATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGTGGGCTACAAGGATTCTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTGTCGCTGTTGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTCCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAAGGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTTGGGGACAAATGAGCCTCGTCATCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCATAGAAGTTGATACTGATGACAACGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGACAACATCACATTGGATCTCCGAAGAAGGTTGATGGAAGGTTGTACAAATAAAGCTTCCAAGGCCGCAAAATGGCGAAATCTTCAACTATACGAGGCTTTGGCAATTTTCTTTTGTTATGGTTCATTTTCTTTTCCAATTTTGTTATTATTATTATTTTTTTCTGAGAAG | 4014 | 44.02 | GCLVLHAASTLSLLLPHTHTLSPSPISLLFGSLSLGLSPSPAHSFARRLARRFHLVTSLSLSGLAVSLSLDPLSLPLGSTFPPPFLSRFYSAGSTSLTCFPLSYSPSRRRCAAAAGFLSPPPPLPFCNDSVRVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLSSPVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQLCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDSILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEASGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAEGVPELCPNSEWCAKQSLDTQSLGVQLSLLESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFPEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDKEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERLGTNEPRHHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSTPIEVDTDDNDPTLASFLNKLKRKKHQPSSGGDNITLDLRRRLMEGCTNKASKAAKWRNLQLYEALAIFFCYGSFSFPILLLLLFFSEK | 1338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 24750910 | 24776529 | + | ClCG05G014580.1 | Cla05g01516 | 273006 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01516 | 1338 | Gene3D | - | 766 | 820 | - | - | |
Cla05g01516 | 1338 | Pfam | Myb-like DNA-binding domain | 822 | 865 | IPR001005 | - | |
Cla05g01516 | 1338 | Pfam | Myb-like DNA-binding domain | 663 | 708 | IPR001005 | - | |
Cla05g01516 | 1338 | Gene3D | - | 660 | 711 | - | - | |
Cla05g01516 | 1338 | MobiDBLite | consensus disorder prediction | 186 | 205 | - | - | |
Cla05g01516 | 1338 | ProSiteProfiles | Myb-like domain profile. | 658 | 710 | IPR001005 | - | |
Cla05g01516 | 1338 | ProSiteProfiles | Myb-like domain profile. | 816 | 866 | IPR001005 | - | |
Cla05g01516 | 1338 | MobiDBLite | consensus disorder prediction | 894 | 988 | - | - | |
Cla05g01516 | 1338 | CDD | SANT | 772 | 813 | IPR001005 | - | |
Cla05g01516 | 1338 | MobiDBLite | consensus disorder prediction | 930 | 953 | - | - | |
Cla05g01516 | 1338 | MobiDBLite | consensus disorder prediction | 1174 | 1189 | - | - | |
Cla05g01516 | 1338 | SUPERFAMILY | Homeodomain-like | 695 | 765 | IPR009057 | - | |
Cla05g01516 | 1338 | MobiDBLite | consensus disorder prediction | 954 | 976 | - | - | |
Cla05g01516 | 1338 | Gene3D | - | 823 | 869 | - | - | |
Cla05g01516 | 1338 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 711 | 766 | IPR017930 | - | |
Cla05g01516 | 1338 | CDD | SANT | 718 | 762 | IPR001005 | - | |
Cla05g01516 | 1338 | Pfam | Myb-like DNA-binding domain | 719 | 780 | - | - | |
Cla05g01516 | 1338 | SUPERFAMILY | Homeodomain-like | 655 | 711 | IPR009057 | - | |
Cla05g01516 | 1338 | PANTHER | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 159 | 391 | - | - | |
Cla05g01516 | 1338 | PANTHER | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 603 | 1221 | - | - | |
Cla05g01516 | 1338 | PANTHER | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 389 | 594 | - | - | |
Cla05g01516 | 1338 | SUPERFAMILY | Homeodomain-like | 766 | 862 | IPR009057 | - | |
Cla05g01516 | 1338 | ProSiteProfiles | Myb-like domain profile. | 764 | 815 | IPR001005 | - | |
Cla05g01516 | 1338 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 816 | 870 | IPR017930 | - | |
Cla05g01516 | 1338 | ProSiteProfiles | SANT domain profile. | 714 | 763 | IPR017884 | - | |
Cla05g01516 | 1338 | CDD | SANT | 823 | 866 | IPR001005 | - | |
Cla05g01516 | 1338 | ProSiteProfiles | Myb-like domain profile. | 711 | 762 | IPR001005 | - | |
Cla05g01516 | 1338 | MobiDBLite | consensus disorder prediction | 1148 | 1213 | - | - | |
Cla05g01516 | 1338 | SMART | sant | 505 | 659 | IPR001005 | - | |
Cla05g01516 | 1338 | SMART | sant | 768 | 817 | IPR001005 | - | |
Cla05g01516 | 1338 | SMART | sant | 662 | 712 | IPR001005 | - | |
Cla05g01516 | 1338 | SMART | sant | 820 | 868 | IPR001005 | - | |
Cla05g01516 | 1338 | SMART | sant | 715 | 764 | IPR001005 | - | |
Cla05g01516 | 1338 | Gene3D | - | 715 | 765 | - | - | |
Cla05g01516 | 1338 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 768 | 815 | IPR017930 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01516 | Cla-Chr5:24750910 | Cla10g00707 | Cla-Chr10:11074243 | 2.37E-07 | dispersed | |
Cla05g01516 | Cla-Chr5:24750910 | Cla04g01239 | Cla-Chr4:27505759 | 1.77E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61097 | PF13921 | Myb_DNA-bind_6 | 3.50E-11 | CL0123 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01516 | K09422 | - | csv:101216287 | 1435.24 |