Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01516 GGGTGCCTCGTTTTGCATGCAGCCTCCACCCTCTCTCTCCTGCTGCCACACACACACACTCTCTCTCCCTCGCCGATCTCTCTCCTGTTTGGCTCTCTCTCTCTCGGTCTCTCTCCTTCGCCGGCACACTCTTTCGCTCGGCGTCTCGCTCGGCGTTTTCATCTCGTGACATCACTTTCTCTCTCGGGTCTCGCCGTCTCGCTTTCGCTAGACCCTCTCTCTCTCCCTCTCGGCAGTACGTTTCCCCCTCCCTTTCTCTCTCGATTTTACTCGGCCGGCAGCACCTCCTTAACATGCTTCCCTCTTAGCTACTCTCCCTCACGCCGCCGTTGTGCCGCTGCCGCCGGATTTCTCTCTCCGCCGCCACCGCTGCCTTTTTGCAATGATTCAGTCAGGGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGAAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTCATCACCTGTTGCCGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAATCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTTGTGCGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTAATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAACAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAGCATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGTGGGCTACAAGGATTCTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTGTCGCTGTTGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTCCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAAGGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTTGGGGACAAATGAGCCTCGTCATCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCATAGAAGTTGATACTGATGACAACGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGACAACATCACATTGGATCTCCGAAGAAGGTTGATGGAAGGTTGTACAAATAAAGCTTCCAAGGCCGCAAAATGGCGAAATCTTCAACTATACGAGGCTTTGGCAATTTTCTTTTGTTATGGTTCATTTTCTTTTCCAATTTTGTTATTATTATTATTTTTTTCTGAGAAG 4014 44.02 GCLVLHAASTLSLLLPHTHTLSPSPISLLFGSLSLGLSPSPAHSFARRLARRFHLVTSLSLSGLAVSLSLDPLSLPLGSTFPPPFLSRFYSAGSTSLTCFPLSYSPSRRRCAAAAGFLSPPPPLPFCNDSVRVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLSSPVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQLCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDSILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEASGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAEGVPELCPNSEWCAKQSLDTQSLGVQLSLLESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFPEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDKEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERLGTNEPRHHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSTPIEVDTDDNDPTLASFLNKLKRKKHQPSSGGDNITLDLRRRLMEGCTNKASKAAKWRNLQLYEALAIFFCYGSFSFPILLLLLFFSEK 1338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24750910 24776529 + ClCG05G014580.1 Cla05g01516 273006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01516 1338 Gene3D - 766 820 - -
Cla05g01516 1338 Pfam Myb-like DNA-binding domain 822 865 IPR001005 -
Cla05g01516 1338 Pfam Myb-like DNA-binding domain 663 708 IPR001005 -
Cla05g01516 1338 Gene3D - 660 711 - -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 186 205 - -
Cla05g01516 1338 ProSiteProfiles Myb-like domain profile. 658 710 IPR001005 -
Cla05g01516 1338 ProSiteProfiles Myb-like domain profile. 816 866 IPR001005 -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 894 988 - -
Cla05g01516 1338 CDD SANT 772 813 IPR001005 -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 930 953 - -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 1174 1189 - -
Cla05g01516 1338 SUPERFAMILY Homeodomain-like 695 765 IPR009057 -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 954 976 - -
Cla05g01516 1338 Gene3D - 823 869 - -
Cla05g01516 1338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 711 766 IPR017930 -
Cla05g01516 1338 CDD SANT 718 762 IPR001005 -
Cla05g01516 1338 Pfam Myb-like DNA-binding domain 719 780 - -
Cla05g01516 1338 SUPERFAMILY Homeodomain-like 655 711 IPR009057 -
Cla05g01516 1338 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 159 391 - -
Cla05g01516 1338 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 603 1221 - -
Cla05g01516 1338 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 389 594 - -
Cla05g01516 1338 SUPERFAMILY Homeodomain-like 766 862 IPR009057 -
Cla05g01516 1338 ProSiteProfiles Myb-like domain profile. 764 815 IPR001005 -
Cla05g01516 1338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 816 870 IPR017930 -
Cla05g01516 1338 ProSiteProfiles SANT domain profile. 714 763 IPR017884 -
Cla05g01516 1338 CDD SANT 823 866 IPR001005 -
Cla05g01516 1338 ProSiteProfiles Myb-like domain profile. 711 762 IPR001005 -
Cla05g01516 1338 MobiDBLite consensus disorder prediction 1148 1213 - -
Cla05g01516 1338 SMART sant 505 659 IPR001005 -
Cla05g01516 1338 SMART sant 768 817 IPR001005 -
Cla05g01516 1338 SMART sant 662 712 IPR001005 -
Cla05g01516 1338 SMART sant 820 868 IPR001005 -
Cla05g01516 1338 SMART sant 715 764 IPR001005 -
Cla05g01516 1338 Gene3D - 715 765 - -
Cla05g01516 1338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 768 815 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01516 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1435.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01516 Cla-Chr5:24750910 Cla10g00707 Cla-Chr10:11074243 2.37E-07 dispersed
Cla05g01516 Cla-Chr5:24750910 Cla04g01239 Cla-Chr4:27505759 1.77E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g00952 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
Cla05g01516 . 385 898 MYB-Related Transcription Factor Family AT3G18100 51.6 4.6e-144 508.8
Cla10g00707 . 59 333 MYB-Related Transcription Factor Family AT3G18100 56.0 3.2e-89 326.6
Cla05g01516 . 385 898 MYB-Related Transcription Factor Family AT3G18100 51.6 4.6e-144 508.8
Cla10g00707 . 59 333 MYB-Related Transcription Factor Family AT3G18100 56.0 3.2e-89 326.6
Cla06g00952 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61097 PF13921 Myb_DNA-bind_6 3.50E-11 CL0123 Cla TF