Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01523 ATGCGATGTTTGATTTTTCACACACCCTTTTGGTTGTTTTTTGTGTTGGTGTCCAATTTCAAGCTCTGTTTTTCACAAGATTACACCATTGGCGACTCTCTGCCTGCGGCGGCGGCGCCGCCGCAGCAAAATGAATGTAATGGGATTTTCTTAACCTACACGTTCTTTTCAAGGGAAAAAGAATTTCCCCATGTGAAGAATGTTTCTGCTCAGGCTTGGGCGTTCAGAGCTCAGGCCACCGTGCTGAACGCCGGCGCGACCGAGCTGGACGCTTGGAAGATGTATATTGGGTTTCAACATAGAGAGATTTTAGTGTCGGCGGCTGGTGCGGTGTTGGCGGATGGTTCGGATTTCCCCGCCGCCGTCGGGAAAGGGGTGATCTTAGCTGGATACACACAAACGGACTTGAAAACCGCCATACAAACCGCCGGAGATTATAATCAAATGCAGGTGACAATTGATATCACCGGAACCCAATTCGGCGTGAAGAAGAATGGAACTCCGATGCCGAAGACAATTCGCCTTGAAAATGAAGGCTTCAAGTGTCCGCCGCCTCGTCGTCATCGCAACAAAAGTTATATGCATGTTTGCTGCAAGAAAGACCCAAAATTGAAGCAAAAAGCACCAAAGAAGACCAAGTTTTTAGGTCGACAAAACGGCGATCTCTCGCTCACCTACGACGTCATCCAAGCTTATGGGAATAACTATCTTGCACAAGTCAGCATTGACAACAACAACCCTCTTGGCCGCCTCGACCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTTCCACCATGAGAGGAGCTTACACTCACAAAATTGACTACTCTGACTGCATCTTTGGCCCTCAAGCCCAATACTATCAAGATTTTGACTTCTCCCAAATCATGAATTGTGAGAAGAACCCCATCATCGCCGACCTCCCTTCCGATCGAGCCAACGATTCCAAGGTCGGAAAGTTACCCTTCTGTTGCAACAACGGCACCATCTTACCGCCACTGATGGATCCAAGCAAAGCAAGGTCCATTTTTCAGCTCCAAGTCTATAAGCTTCCCCCTGACTTCAACAGAACAGCCTTGTACCCTCCTCAAAAATGGAAGATCAACGGCATTCTTAACCCCAATTACAAATGTGGAGCTCCTATTAGAGTTGATCCAACACAATTTCCTGACTCAACTGGACTTCAATCCATAACCACAGCCATTGCAAGTTGGCAAGTGGTTTGCAATATTACTACTCCAAAACCCAAACAATCAAGATGTTGTGTTTCTTTCTCTGCTTATTATAATGACTCTGTTATCCCTTGCAATACTTGTGCTTGTGGATGTGATCAAACTCAAACTTGCAACCCAAATTCTTCCCCATTGCTTCTTCCACCAGAGGCCCTTTTAGTTCCATTTGACAATAGAACTCTAAAGGCAAAAGCTTGGGCCAAAATCAAACACTTTCCAATTCCAAAGAAACTCCCTTGTCCTGACAATTGTGGGGTTAGTTTAAATTGGCATATAAACTCAGATTATAACAGTGGTTGGACGGCTAGAATTACCCTTTTCAATTGGGAAGAATACCCTTTTGAGGAATGGTTTGCTGCTGTTCAATTGGATAAAGCTGCTAAAGGCTATGAGAATGTCTACTCTTTCAATGGGACTAAACTCCCACCAGATATGATCAAGAACACCATCTTTTTCCAAGGATTGGAAGGTCTTAATTACCTGATGGGGGAGATGAATGGGACGGACCCGAGATTCGATCCTCGAGTACCGGGAAAGCAACAATCGGTAATCTCTTTCACTAAGAAGAATTTGAGGAACCTCAATATAAAGGAAGGAGATGGATTCCCTTCAAAGGTTTATTTCAATGGAGAAGAATGTGCACTTCCTCCTCATATTCCTTTAGGAAATGGTGCTGCTCACAGCCTCCATGTCAGCTCTGAACCTTTAATGCTGCTGCTCACAAGTAGCATTGTAGCGCCAAGATGGCGCTACCTCGACGCATCCTTGCTGAAACGCATTCTAGCGCTGCGACGCTTAGATGGCGTTGTCGCGGCGCTAAAACCTGAAAGCAATATTTCTGAAACGCATTTTAGCGCTGCAACGCTTGGACGGCGCTACCGCAGCGCTAAAACCCGAGAGCAAACTTTTTTTCGGATGCAGCCCTAG 2169 45.64 MRCLIFHTPFWLFFVLVSNFKLCFSQDYTIGDSLPAAAAPPQQNECNGIFLTYTFFSREKEFPHVKNVSAQAWAFRAQATVLNAGATELDAWKMYIGFQHREILVSAAGAVLADGSDFPAAVGKGVILAGYTQTDLKTAIQTAGDYNQMQVTIDITGTQFGVKKNGTPMPKTIRLENEGFKCPPPRRHRNKSYMHVCCKKDPKLKQKAPKKTKFLGRQNGDLSLTYDVIQAYGNNYLAQVSIDNNNPLGRLDHWNLTWEWMRGEFISTMRGAYTHKIDYSDCIFGPQAQYYQDFDFSQIMNCEKNPIIADLPSDRANDSKVGKLPFCCNNGTILPPLMDPSKARSIFQLQVYKLPPDFNRTALYPPQKWKINGILNPNYKCGAPIRVDPTQFPDSTGLQSITTAIASWQVVCNITTPKPKQSRCCVSFSAYYNDSVIPCNTCACGCDQTQTCNPNSSPLLLPPEALLVPFDNRTLKAKAWAKIKHFPIPKKLPCPDNCGVSLNWHINSDYNSGWTARITLFNWEEYPFEEWFAAVQLDKAAKGYENVYSFNGTKLPPDMIKNTIFFQGLEGLNYLMGEMNGTDPRFDPRVPGKQQSVISFTKKNLRNLNIKEGDGFPSKVYFNGEECALPPHIPLGNGAAHSLHVSSEPLMLLLTSSIVAPRWRYLDASLLKRILALRRLDGVVAALKPESNISETHFSAATLGRRYRSAKTREQTFFRMQP 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25005293 25012099 - ClCG05G014650.2 Cla05g01523 273013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01523 722 Pfam COBRA-like protein 236 415 IPR006918 GO:0010215|GO:0031225
Cla05g01523 722 PANTHER COBRA-LIKE PROTEIN 7 10 656 - -
Cla05g01523 722 PANTHER COBRA-LIKE PROTEIN 10 10 656 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01523 Cla10g00527 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00680 Cla-Chr5:6326478 Cla05g01523 Cla-Chr5:25005293 0 dispersed
Cla05g01523 Cla-Chr5:25005293 Cla06g01530 Cla-Chr6:28863541 4.31E-37 dispersed
Cla11g00699 Cla-Chr11:8766091 Cla05g01523 Cla-Chr5:25005293 4.92E-22 dispersed
Cla08g00557 Cla-Chr8:16906362 Cla05g01523 Cla-Chr5:25005293 1.32E-10 transposed
Cla10g00527 Cla-Chr10:6977870 Cla05g01523 Cla-Chr5:25005293 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01523 - - csv:101216608 983.4