Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01528 ATGGAGAAGAGTGAATGCGGAGAGAAGGGGAAGAGTGAATGCGGACAAAAAGCGACAGAAGGCGACAGAAGAGAGAGAGGGAGAGCAGACATCGGGCAGAGTGTGCATTGGGAAGCGGCGGAAACTGGGAAGGATTGGGTTGGATTGTATTTGGGTGAGGGGCAATGCGGCATTTCGAAAACAAATCAGACCGAACCAGAAACCTGGTTCGTTTTTCAGATTCCATATAGTCCAGCAACGAAGACTTGCAGAAGCTGTAAACGACGTCGTATATCCGCGGCTCCTCTGTCTTCCTCTTCGTTACAGTTTCTTTCGCTTTTGTTTGTTCATTCACATCGCCCATCGGCGATCTTCAGCTTCGAAGCACCATTTTCTGAATCCTCATCGCAAGGTTTAGAGAAGTTGGAAAATGGAGGAATTTCTTGTGGCACATTGGTTCCTCTGTTTCTGTGGCGACGCTATCAGGACTCCCGCTCCGGTCATGCACATGAAGATGAGGATCAGGTTCCTCAGAGAGAAACGGTTGTTCGTGCCGCTGGTGGTGGCCGTCGTATGCGTCGGAGGCCTGCTACGGCTGCTAGTTCGTCGAATGCAGGGGCATCTCTGGAAGATGGTGCTGATGGAAGTGATGATGAAATTGCTGCAGAAGAATACCATGAAGGAAGAGCATTGAAGAAGAAAGAAAAGAAGCGACAAGAGCGGGAGGCACAGAGACAGGCTGAACAAGCTTCCCGTGACTCAAGGTTAACAAAACAAGACCGTTATGCGGAAATCCGGAGGAAAAAAGATGAGGAGCGTGAAGAGCAGGAACGGTTACTGGAAGAAGAAGCCAAGGCACGGAAGGCCAAGGAGGAAGAGGCTGCAGCACTTGAGTTTGAGAAGTGGAAAGGAGAATTTTCAGTTGATGCTGAAGGTACAACTGAAGCTGAAGTGGAAGGCGGAAATCAAGATCTGCTCTCTGCTTTTGTGGAATATATAAAGAATCATAAATGTGTTCCATTGGAAGATCTTGCTGCAGAATTTAAATTAAGAACTCAGGAATGTATTAATCGGATCACCTCCCTGGAGAGTATGGGCCGCCTTTCTGGTGTTATGGACGATAGAGGAAAATACATATACATATCAAAGGAAGAAATGCAAGCAGTTGCTGATTTCATCAAGCGTCAGGGAAGGGTAAGCATTTCACATCTAGCTAGTAAGTCCAACCAGTTCATTGATTTGGAACCAAAAGCCCAATTGGTTGAGGAAATCAATGTTGATGAGATAACTGTCTCTTAA 1278 46.79 MEKSECGEKGKSECGQKATEGDRRERGRADIGQSVHWEAAETGKDWVGLYLGEGQCGISKTNQTEPETWFVFQIPYSPATKTCRSCKRRRISAAPLSSSSLQFLSLLFVHSHRPSAIFSFEAPFSESSSQGLEKLENGGISCGTLVPLFLWRRYQDSRSGHAHEDEDQVPQRETVVRAAGGGRRMRRRPATAASSSNAGASLEDGADGSDDEIAAEEYHEGRALKKKEKKRQEREAQRQAEQASRDSRLTKQDRYAEIRRKKDEEREEQERLLEEEAKARKAKEEEAAALEFEKWKGEFSVDAEGTTEAEVEGGNQDLLSAFVEYIKNHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKYIYISKEEMQAVADFIKRQGRVSISHLASKSNQFIDLEPKAQLVEEINVDEITVS 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25133836 25137833 - ClCG05G014700.2 Cla05g01528 273018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01528 425 MobiDBLite consensus disorder prediction 161 270 - -
Cla05g01528 425 SMART DDRGK_2 220 406 IPR019153 -
Cla05g01528 425 Coils Coil 222 246 - -
Cla05g01528 425 Coils Coil 248 293 - -
Cla05g01528 425 MobiDBLite consensus disorder prediction 1 32 - -
Cla05g01528 425 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 216 419 - -
Cla05g01528 425 MobiDBLite consensus disorder prediction 215 270 - -
Cla05g01528 425 Pfam DDRGK domain 225 405 IPR019153 -
Cla05g01528 425 MobiDBLite consensus disorder prediction 1 33 - -
Cla05g01528 425 SUPERFAMILY Winged helix DNA-binding domain 313 382 IPR036390 -
Cla05g01528 425 Gene3D - 317 374 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01528 K23344 DDRGK1; DDRGK domain-containing protein 1 - csv:101212750 388.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01528 Cla-Chr5:25133836 Cla01g01436 Cla-Chr1:28856401 9.43E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g457 Blo03g00579 . . . . . . . . . Cma01g01147 Cma09g00932 . Car09g00846 Sed04g3188 Cpe06g00750 Cpe02g00753 Bhi09g01935 Tan01g4516 Cmetu04g2882 . . Mch11g1161 . . . . . . . . . . Cone14ag1125 . Lsi04g01235 . . . . . . . Bpe11g00528 . . . . . Cmo09g00929 . . . Car16g00559 . . . . . . . . . Cla05g01528 Cam05g1637 Cec05g1641 Cco05g1674 Clacu05g1629 Cmu05g1525 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007655 1 2 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35