Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01542 ATGGTTGGAACGCCAACTAATGGAAGGGCTCGCTTGTCCTTCTCGTTGGTTAATGGTGGACAGGAACTTTGTCTTACAAGTACTCCCACCAGCATTGCAGGCTCCGATTGCGGTGGCATTGAGTTCACTAAAGAAGATGTTGAAGCTTTGTTGAATGAGAAGCTTAAAAGGAAGGACAGGTTTAATCTAAAGGTCAGTCCCTCCTTTTCAGCAGTTAAGGAAAAATGTGATAACATGGTGGAATACATTAAAAAGCTTAAACTCTGCATCAAATGGTTCCAAGAGCTTGAATATAGCTACTTATTAGAGCAGAAGAAGTTACAAGATGAGTTGGAATCTTCTGAGATCAAGTGCAGTGAAATGGAAATGATAGTGAAGAAGAAAGAGGAAGAATTGAATTCTATCATTGCGGAACTCAGAAAGAACAATGCTTTTTTGCAAGAGAAATTCACAAAAGAAGAATCAGATAAGTTGGCTGCAGTAGAATCTCTCACCAAGGAGAAAGAGGCTAGATTGATTATGGAGAGGTCACAGGCTTCAATCTCTGAGGAGCTTACAAGGGCTCAACGTGAGCTCTCGAGTGCAAATCAAAAGATATCGTCTCTTAATGAGATGTACAAGCGGTTACAGGATTACATTACTAGTTTACAGCAATATAATGGCAAGCTTCATACAGAGCTTTCGACTGCTGAGGATGACCTTAAACGTGTAGAGAAAGAAAAAGCTGCTGTGGTGGAGGACCTCAGTATGATCAAGGGTGAACTTGCTCTGTCTAAAGCATCTCAAGATGAGGCAGTAAAGCAGAAGGATGCTATGGTGAATGAAGTTACGTGTTTAAGAAGAGAAATACAACAGGTTAGAGATGATCGAGATCGCCAACTATCTCTGGTTCAGACTTTGTCAGATGAAGTAGAGAAGTGCAGAGAGTCTGCAGGAAAGTACTGTGAGGAGCTGGATGAAATGAAGGCAAAAGCAAATGAATTAGAGTCCTTTGAAAATCTTGGAGTTGTTTTGCAGGCAACATGTTCTTCACAAAGCACTGAGCTAAGGGCATTGCAAAATCATCTAGCTGCTGCAGAAAACAAGCTGCAGGTCTCTGATCTAACTGCAATGGAGACAATGCATGAATTCGAAGATCAAAAGAGACTTGTACTCGACTTACAACAGCGACTTGCAGATGCAGAAAATAAGCTTATGGAAGGAGAGAAGCTTCGGAAAAAATTGCACAATACTATCTTGGAATTAAAAGGAAACATTCGTGTATTTTGTCGAGTGCGACCTCTGTTACCTGATGAACGTTCTAGTCCCCAAGGCAATTTTATCTCCTATCCGTCATCAGTGGAATCTCTTGGACGAGGAATCGATCTGGTGCAAAATGGTCAAAGACATTCTTTCACATATGACAAGGTTTTTTCACCAGAAGCGACACAGGAAGACATCTTCGTAGAAATTTCCCAGCTCGTACAAAGTGCCCTTGATGGTTATAAGGTTTGCATATTTGCCTACGGTCAAACTGGTTCGGGAAAAACCTATACGATGATGGGTCAACCAGGGCTCCTTGAAGAGAAGGGACTGATACCTCGATCGTTGGAACAAATATTTCAAACTAGGCAATCTCTTCAACCTCAGGGTTGGAAATATGAAATGCAGGTATCGATGTTGGAAATATACAATGAAACAATCCGTGATTTACTATCAATAAATCGATCAACTCCAGATGTGCTTCGAGCAGAAAATGGTTCTCCTATAAAACCTTACTCAATCAAACACGATGCAAGTGGAAATACTCAAGTTTCTGATCTTACAGTCGTGGATGTTCGTAGTGCCAGGGAGGTCTCATTTCTATTAGAGCAAGCTTCTCGTAGCAGATCCGTTGGCAAAACTCAAATGAACGAGCAATCATCGAGAAGTCATTTTGTGTTCACTCTCAAAATATCCGGTATCAATGAGAGTACTGATCAACAAGTACAAGGGATTTTGAATTTAATTGATCTTGCTGGGAGTGAGCGTCTTTCCAAAAGCGGGTCAACAGGAGATCGACTGAAAGAAACCCAAGCCATAAATAGAAGTTTATCATCTTTAAGTGATGTTATATTTGCTTTGGCAAAGAAGGAAGAGCATGTTCCATTTAGAAACTCCAAGCTTACCTATCTTCTTCAGCCATGTCTCGGTGGAGATTCAAAGACGTTGATGTTTGTAAATATCTCTCCTGATTCCTCCTCGGCCAGTGAATCACTCTGCTCGCTTCGCTTTGCTGCCCGGGTTAATGCTTGTGAGATCGGTACTCCTCGGCGTCTAACCAATACACGACCTTAA 2316 41.41 MVGTPTNGRARLSFSLVNGGQELCLTSTPTSIAGSDCGGIEFTKEDVEALLNEKLKRKDRFNLKVSPSFSAVKEKCDNMVEYIKKLKLCIKWFQELEYSYLLEQKKLQDELESSEIKCSEMEMIVKKKEEELNSIIAELRKNNAFLQEKFTKEESDKLAAVESLTKEKEARLIMERSQASISEELTRAQRELSSANQKISSLNEMYKRLQDYITSLQQYNGKLHTELSTAEDDLKRVEKEKAAVVEDLSMIKGELALSKASQDEAVKQKDAMVNEVTCLRREIQQVRDDRDRQLSLVQTLSDEVEKCRESAGKYCEELDEMKAKANELESFENLGVVLQATCSSQSTELRALQNHLAAAENKLQVSDLTAMETMHEFEDQKRLVLDLQQRLADAENKLMEGEKLRKKLHNTILELKGNIRVFCRVRPLLPDERSSPQGNFISYPSSVESLGRGIDLVQNGQRHSFTYDKVFSPEATQEDIFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGQPGLLEEKGLIPRSLEQIFQTRQSLQPQGWKYEMQVSMLEIYNETIRDLLSINRSTPDVLRAENGSPIKPYSIKHDASGNTQVSDLTVVDVRSAREVSFLLEQASRSRSVGKTQMNEQSSRSHFVFTLKISGINESTDQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINRSLSSLSDVIFALAKKEEHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDSSSASESLCSLRFAARVNACEIGTPRRLTNTRP 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25734835 25738827 - ClCG05G014830.2 Cla05g01542 273032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01542 771 Gene3D - 177 339 - -
Cla05g01542 771 PRINTS Kinesin heavy chain signature 659 677 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla05g01542 771 PRINTS Kinesin heavy chain signature 494 515 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla05g01542 771 PRINTS Kinesin heavy chain signature 708 729 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla05g01542 771 PRINTS Kinesin heavy chain signature 628 645 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla05g01542 771 Coils Coil 342 369 - -
Cla05g01542 771 Coils Coil 377 411 - -
Cla05g01542 771 Pfam Kinesin motor domain 424 756 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla05g01542 771 Coils Coil 111 156 - -
Cla05g01542 771 PANTHER KINESIN-LIKE PROTEIN 6 771 - -
Cla05g01542 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 756 IPR027417 -
Cla05g01542 771 CDD KISc_C_terminal 416 760 - -
Cla05g01542 771 Coils Coil 178 212 - -
Cla05g01542 771 SMART kinesin_4 416 766 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla05g01542 771 ProSiteProfiles Kinesin motor domain profile. 418 758 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla05g01542 771 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 771 - -
Cla05g01542 771 Coils Coil 269 289 - -
Cla05g01542 771 Coils Coil 220 247 - -
Cla05g01542 771 Gene3D Kinesin motor domain 361 760 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01542 K10405 KIFC1; kinesin family member C1 - csv:101215636 1381.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01542 Cla-Chr5:25734835 Cla07g01010 Cla-Chr7:26488452 2.89E-94 dispersed
Cla05g01542 Cla-Chr5:25734835 Cla03g00482 Cla-Chr3:5344976 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006975 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34