Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01545 ATGACATTTCGACAATTTATGGGTTTTGCAAAAAGGAGATGTTTGGTTGTTCTGTTGATTCTCATTTATGCTTCTTTAGCAACTTGCTTGAAGGACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTTGTTAAGTGCAACTTGGATTTGTTTCAGTTAAAGGAAGCTGCAGATGGTACTGACCTATGCTTTGAAGAAAGACCTGGAAGCAAAAATGGAATTAATTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAGAATTTTCATGTCTCTGGGAAAGACTACAACTCTGAAGCTTGGTACACCAGGTATCTAGAGTCATTGTTTTTAATGCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATGGCTTCGAAGTTCTAAAGAAGTGCCTGCTCCGGCACCTGAATCTTCAGCAGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATCAACAAACAGTCATCATCGCTGTTGTTGTAACCGCAACAGTGACTTTTATTATTGTAGCTCTGCTATTTTTATGCTATAATAAAAGTGGTTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTTCTTCGCCCAAATATTCTGCCTTTGGGAATTCTCTTAAGGATGACAAGTTCATGAGTCAATCATCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAACCTGCACATTGTCTCTGATGGTGCACGTACTTCAATGCAGGGACCTCCGTCTTTTGGAGCTACTGGAATTCCGAATAATTCATCTTTTGGATCAACAAATATGGCTGGCAGTACTAAGGGTTTGGTGCCACCTCCTCCAGGAGCAGTACCAGTCACCCCAGAAATCATACCTCCTTTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGCCCTTCGTCTTTTAAGCCTCCATCCAACATGGCTAGTCCTCCTCCTCCTCCTCCTCCACCTCCTGCTGCTGCTGCAGCAGCAGCACCACCACCACCACCACCACCAAGACCTCCTGGAAATTCATGTCGCCCTCCAGGACCTCCTCCACCTCCACCACCTGCACCAGGCAAAGCAGGCCCTCGCCCACCACCACCTCCCAAAAGTGGTATTGCTCCTCCTCGGCCACCTCCATTAGCACCCAAAGGTGCAAATCCACCTCGACCTCCAAAGCCTTTTGCTTCAGGTGATGATGATATGGACGAATCAGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACAGCTGTACATTCAGATCATTGATTCAAAGAAAGCACAAAATCTTTCCATTCTTTTGCGAGCACTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGTAATCCTACCTGA 1695 44.54 MTFRQFMGFAKRRCLVVLLILIYASLATCLKDHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLKEAADGTDLCFEERPGSKNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKNFHVSGKDYNSEAWYTRYLESLFLMPGSLRRKLSSRWLRSSKEVPAPAPESSADEKPSRKASSTSGQKEKKSNNQQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGNSLKDDKFMSQSSSLSHHQRAPSLDGNLHIVSDGARTSMQGPPSFGATGIPNNSSFGSTNMAGSTKGLVPPPPGAVPVTPEIIPPLKPPPGRAVPLPPERPSSFKPPSNMASPPPPPPPPPAAAAAAAPPPPPPPRPPGNSCRPPGPPPPPPPAPGKAGPRPPPPPKSGIAPPRPPPLAPKGANPPRPPKPFASGDDDMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPAQLYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGNPT 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25829697 25837016 + ClCG05G014870.1 Cla05g01545 273035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01545 564 Pfam Formin Homology 2 Domain 462 563 IPR015425 -
Cla05g01545 564 PANTHER FORMIN-LIKE PROTEIN 364 562 - -
Cla05g01545 564 PANTHER FORMIN-RELATED 364 562 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla05g01545 564 MobiDBLite consensus disorder prediction 164 196 - -
Cla05g01545 564 Gene3D Formin, FH2 domain 456 564 IPR042201 -
Cla05g01545 564 SUPERFAMILY Formin homology 2 domain (FH2 domain) 405 563 - -
Cla05g01545 564 MobiDBLite consensus disorder prediction 327 449 - -
Cla05g01545 564 PANTHER FORMIN-RELATED 1 175 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla05g01545 564 PANTHER FORMIN-RELATED 180 368 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla05g01545 564 ProSiteProfiles Formin homology-2 (FH2) domain profile. 456 564 IPR015425 -
Cla05g01545 564 PANTHER FORMIN-LIKE PROTEIN 1 175 - -
Cla05g01545 564 PANTHER FORMIN-LIKE PROTEIN 180 368 - -
Cla05g01545 564 MobiDBLite consensus disorder prediction 293 322 - -
Cla05g01545 564 MobiDBLite consensus disorder prediction 293 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01545 - - - csv:101213072 613.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01545 Cla-Chr5:25829697 Cla03g01635 Cla-Chr3:32236458 5.89E-22 dispersed
Cla05g01545 Cla-Chr5:25829697 Cla02g01189 Cla-Chr2:25442545 6.03E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81