Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01547 ATGCCAACAGTTTGGTTTTCTCTGAAAAAGTCCTTCCCTTGCAAGCCAGAGCCATCAGAAGTCTATGATCCAAAGTGCAGGAAACAACTCAACACAATCACAACTAAGAAAGCATCCAGAAAGTCAGGTTGTTCTTCTGGAAGGTCTGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATGGAAAAACCACCGATTTGCAGCCCGAGGTCGATCGGTAGCAGCGAGTTCCTCAACCCAATTGCTCATGAAGTCATACTGAGCAACTCAAAGTGTGAGCTCAAGATTACTGGTTTTGGAAGCTTCCACCAAGAGGGTGTAGGAAATGCTGGCTCTGGAGGGGGAGCAGGTGGGAACTCGCCATTTTCCGGTACACTAAGACCCGGAACTCCTGGTCCAGGGGAGCACTTTGTTAACAACTCCAGTTCTCCTTTTAGTACTACCTCCATATCTGCTGCAAGAAAGCTTCCTTCTCTTAGAGATGGGCCTGCGGCTGGGAGTACTGCTAAATCTAAGGTGGGTGGGGAAATTCATACAAGCAAAAGGTTCTCCCCGCTAACCGAACTAAATGGTAATGCATTTTCGACGGTTACTTGCCATAAATGTGGAGAGCAGTTTTGCAAATTGGAGGCTGCTGAGTCTCACCATCTCTCTAAGCATGCTGTTGAGGCCTTCATGGAGTTGATGTTTTTTTCTGTCAGCACTAACTATGCTCTATTTCTCATAGTTACCGAGCTTGTGGAAGGTGATTCATCGAGGAAAATTGTCGAAATAATATGTCGAACGAACTTGTTGAAATCAGAGAACAATGGCAACCGTATCGAACGAGTCTTCAAAGTTCACAATATGCAAAAAACGTTAGCTGGATTTGAAGAATACCGGGAAATGGTGAAGATCAAGGCAAGCAAGCTTTCGAAGAAACACCCTCGATGCCTTGCGGATGGGAACGAGCTGCTGAGGTTTTACGGGACTACTTTAGGCTGCTCTCTTGGACTAAATGGCTCCTCCAGCCTCTGCATATCACAGAAATGCAATGTCTGCAGAATTATAAGGAATGGTTTCTCAGCAAAGAAGGATATGAAAGAAGAAGTAGGAGTTTTCACGACTTCGACGAGCGGAAAAGCTTTCGAAACCATTGAAACGACAGAAGAAAGCTCAGTAAAGAAAGCATTGCTAATCTGCAGAGTGATTGCAGGGAGGGTTCATAGGCCTTTGGAGAATATACAAGATATGGTTGGCCAAACAGGGTTTGATTCTCTAGCTGGCAAAGTGGGATTACATTCCAACATTGAAGAGCTTTATTTGCTCAGTCCTAGAGCTTTGCTTCCTTGTTTTATTGTAATTTGCAAGCCATGA 1380 44.71 MPTVWFSLKKSFPCKPEPSEVYDPKCRKQLNTITTKKASRKSGCSSGRSGCSRSIANLKDVIHGSKRHMEKPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGSFHQEGVGNAGSGGGAGGNSPFSGTLRPGTPGPGEHFVNNSSSPFSTTSISAARKLPSLRDGPAAGSTAKSKVGGEIHTSKRFSPLTELNGNAFSTVTCHKCGEQFCKLEAAESHHLSKHAVEAFMELMFFSVSTNYALFLIVTELVEGDSSRKIVEIICRTNLLKSENNGNRIERVFKVHNMQKTLAGFEEYREMVKIKASKLSKKHPRCLADGNELLRFYGTTLGCSLGLNGSSSLCISQKCNVCRIIRNGFSAKKDMKEEVGVFTTSTSGKAFETIETTEESSVKKALLICRVIAGRVHRPLENIQDMVGQTGFDSLAGKVGLHSNIEELYLLSPRALLPCFIVICKP 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25896322 25897940 + ClCG05G014890.2 Cla05g01547 273037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01547 459 SUPERFAMILY ADP-ribosylation 252 458 - -
Cla05g01547 459 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Cla05g01547 459 MobiDBLite consensus disorder prediction 143 162 - -
Cla05g01547 459 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 250 459 - -
Cla05g01547 459 PANTHER - 250 459 - -
Cla05g01547 459 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 235 - -
Cla05g01547 459 PANTHER - 2 235 - -
Cla05g01547 459 MobiDBLite consensus disorder prediction 118 184 - -
Cla05g01547 459 Gene3D - 257 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01547 Cla-Chr5:25896322 Cla05g01874 Cla-Chr5:30593687 1.12E-52 dispersed
Cla01g02184 Cla-Chr1:35880354 Cla05g01547 Cla-Chr5:25896322 6.36E-06 wgd
Cla10g00594 Cla-Chr10:8771237 Cla05g01547 Cla-Chr5:25896322 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01547 - - csv:101213316 757.673