Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01549 ATGGTGGGTCATAGGTTGTTCCGTCTCAAACATTGCCAGTGTCGAGAAGCCAACAATATGAGGCAATTCACTTGGGGAAACGATAGAAATCGATGGATGGATCAATATTGCAGATTGCCATTAAATATCTTGAAGGAGTTGTGGATTGCTTGTGTAAAAGCTTTAACTGAAAATAGGATGAAGGAATTTGATAACTTGGTAGCCACAGCAAGAGGTGTCGTGTCTATCGATGGAGATCCATTCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAAAGAGGAATCGGGGGTGAATATATATCGGACTCTAAACTATAGAGAGCCTGCAATTCGGTTACATGGCAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCATTGACCCTATTTCTAAATATGCCCATGGCGATGGGTTGGAGGTCGTGGAGAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCATTGACCCTATTTCTAAATATGCCCATGGCGATGGGTTGGAGGTCGTGGAGAGCGTCAACATGAACAATCCACGTGACAATCTGCTGAGAATGGTGAAGTCATTATCCCTAAAGGTAGTAACTTTGGAAGAGCAAGAATTAAATACCAACACAACCCCTTTCTTCAATAGGTTTGTGGAAACTTTAGATTACTACTTGGAAATCTTTGAGTTCATTGATGTCACTCTACCAAGGAACAATAAGAACCGCATCAATGTCGAACAACATTGTTTGGAAAAAGATATCATTAATGTCATCGCTTGCGAGGGGAGCGAATAA 993 45.12 MVGHRLFRLKHCQCREANNMRQFTWGNDRNRWMDQYCRLPLNILKELWIACVKALTENRMKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPAIRLHGSEWGNYLGLWKRRPHPHHRLPDYSGDVVALAARPSGPPHVRITGIIDPISKYAHGDGLEVVESEWGNYLGLWKRRPHPHHRLPDYSGDVVALAARPSGPPHVRITGIIDPISKYAHGDGLEVVESVNMNNPRDNLLRMVKSLSLKVVTLEEQELNTNTTPFFNRFVETLDYYLEIFEFIDVTLPRNNKNRINVEQHCLEKDIINVIACEGSE 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25965162 25973493 - ClCG05G014910.1 Cla05g01549 273039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01549 330 Coils Coil 250 270 - -
Cla05g01549 330 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 146 181 - -
Cla05g01549 330 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 32 113 IPR005202 -
Cla05g01549 330 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 208 242 IPR005202 -
Cla05g01549 330 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 242 330 IPR005202 -
Cla05g01549 330 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 146 181 IPR005202 -
Cla05g01549 330 ProSiteProfiles GRAS family profile. 35 330 IPR005202 -
Cla05g01549 330 Pfam GRAS domain family 45 112 IPR005202 -
Cla05g01549 330 Pfam GRAS domain family 242 330 IPR005202 -
Cla05g01549 330 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 32 113 - -
Cla05g01549 330 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 208 242 - -
Cla05g01549 330 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 242 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01549 - - - csv:101216606 286.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01549 Cla-Chr5:25965162 Cla02g00919 Cla-Chr2:14042250 2.42E-61 dispersed
Cla05g01549 Cla-Chr5:25965162 Cla03g00132 Cla-Chr3:1342433 1.04E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g405 Blo03g00589 . Bda07g00332 . . . . . . . Cma01g01159 Cma09g00916 . Car09g00833 Sed07g2646 . Cpe02g00742 Bhi09g01957 Tan01g4496 Cmetu04g0683 . Hepe01g1320 Mch11g1144 . . . . . . . . . Cone9ag0110 . . Lsi04g01253 . Chy04g01026 . . . . . Bpe11g00518 . . Bma14g00364 . Cmo01g01214 Cmo09g00910 . . . Car16g00572 . . . . . . . . . Cla05g01549 . . Cco05g1701 Clacu05g1649 Cmu05g1543 Cre05g1656 . . . Cme04g00788
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008964 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61099 PF03514 GRAS 7.60E-26 CL0063 Cla TF