Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01553 ATGTCGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCCACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGGCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTCCCTGTTTTCTCATTCAAGATGTTGAAGTTTATTTGGTGTGTATTGTTATCCACATTTATACAAGATCCCTGGATCTTGAACCCACGTTTTGCACATGTGTTAGCAGAGAGGCTTAGGCTGTTGACTACCCTCCTAATAGACATACTAAGAAATGAGAAAGAAAATGAATTAGAATATGCCTTCATTGTGTTAATTGGCGTACCACAAAATAAGTATAAGATTCCTGAATATGATCCACATATGCGTACAGGATGGCAGTCTAGACACTCAGCTGTTGACTATGATACATGCTTTGCAATCTTGAAACTTATGGTACCTGGCTTGGCTGATAAATCTGCTGGTTACTTCGGAGTGCAATTTCTCCTTTATTCTCATGCACAATGGTGTTTGCTTTATTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGTTAATGGCACATCGGATTAA 963 45.07 MSKGFSSLNPKAMALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKVSWDHFPVFSFKMLKFIWCVLLSTFIQDPWILNPRFAHVLAERLRLLTTLLIDILRNEKENELEYAFIVLIGVPQNKYKIPEYDPHMRTGWQSRHSAVDYDTCFAILKLMVPGLADKSAGYFGVQFLLYSHAQWCLLYFLDGWVIFAEYARPRPPPGNNVNGTSD 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26098172 26101100 - ClCG05G014940.2 Cla05g01553 273043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01553 320 PANTHER TRANSFORMER-2-RELATED 62 157 - -
Cla05g01553 320 Gene3D - 78 163 IPR012677 -
Cla05g01553 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 155 IPR000504 GO:0003723
Cla05g01553 320 SMART rrm1_1 92 166 IPR000504 GO:0003723
Cla05g01553 320 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 295 315 - -
Cla05g01553 320 SUPERFAMILY RNA-binding domain, RBD 73 156 IPR035979 GO:0003676
Cla05g01553 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 156 IPR000504 GO:0003723
Cla05g01553 320 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 62 157 - -
Cla05g01553 320 PANTHER TRANSFORMER-2-RELATED 295 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01553 - - - csv:101217072 253.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01553 Cla-Chr5:26098172 Cla10g01996 Cla-Chr10:35805108 2.33E-16 dispersed
Cla05g01553 Cla-Chr5:26098172 Cla04g01155 Cla-Chr4:26749906 1.82E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g394 . . . Bda09g00380 . Bpe08g01145 . . . . Cma01g01162 Cma09g00914 . Car09g00831 Sed14g0466 Cpe06g00736 Cpe02g00740 Bhi09g01960 Tan01g4493 Cmetu08g1286 . Hepe01g1323 Mch11g1137 . . . . . . . . . . . Cone15ag1130 Lsi04g01255 . Chy04g01029 . . . . . . . Bma07g01319 Bma14g00366 . Cmo01g01216 Cmo09g00908 . . . Car16g00574 . . . . . . . . . Cla05g01553 Cam05g1661 Cec05g1666 Cco05g1706 Clacu05g1655 Cmu05g1549 Cre05g1661 . . . Cme04g00784
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005243 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40