Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g01568 | ATGCTCAAAAAGACAAAAATGGCAAATGCTTCCCTAACTCTGTTTCTGTCTCTGTCTCTGTTTCTCTTCTCTTCACCGTCTGTGGCTGTTGATTTCATAATTTCCTCACAAAACCTCACCCATGGCGCCACTCTTATCTCCGCAAAAGAATTTTTTGAACTGGGTTTCTTCAGCCCAAGAAATTCCACCAACCGTTACTTGGGCATTTGGTACAAAATCATCCCAGTTCGTACAATCGTTTGGGTCGCCAACAGAGAAAACCCCATCACTAATTCTTCCGCTGCTGTCGTTCTCAAAATCAACACCACCACCAGCGATCTCCTCCTTTTTGAGAACGACGCCGTTGTTTGGGTTGGAAAATCGTTGAAACCAGTAAAAACCCCCAAACTACACCTCTTAGACAATGGAAATCTGGTGTTGAAAGACGCTGAATCAGAGAAAATTTCATGGCAAAGCTTCGATTACCCAACGGATACATTACTTCCCGGAATGAAACTCGGATGGGACTTCGAAAATAGAATCCAACGCCGATTATCCGCTTGGAAATCCTCCGATGACCCATCTCCAGGGAGTTTAACGATGGAAATGATGAACACAAACTACCCAGAACCAGCGATGTGGAATGGGTCGAAAGAGTTCATGAGAAGCGGACCATGGAACGGCCTTCAATTCAGCGCAAAACCCACATCGGCTTTACCCATTTTAGTGTACAGCTATGTAAACAACAAATCCGAGCTTACTTACAGCTACGAGCTCATAAACTCTTCGTTAATCGGAAGAATGGTGTTGAATCAAACGCTATTCAGAAGAGAAGCTTGGTTATGGTCTGCATCGGAGAATATTTGGAAGCTGTATGCGACTATGCCGAGGGATTACTGCGATACTTACGGACTTTGTGGTGCGTTTGGGAGCTGTGACATTGAGCAAGTGCCTGCTTGTCAATGTCTAAGAGGGTTTCATCCTAAAGTACAAGAGAAATGGAATTTGATGGATTATACTGAAGGGTGTGTGAGGAATAAGGCTTTGAATTGTTCTGATAAAACTGGGTTTGCAAAGCTTCCGGGGTTGAAATTGCCTGATACAAAGCAGTCTTGGGTTAATGAAAGTATGAGTTTGAATGAATGTAGAGATAAGTGTTTGAGGAATTGTTCTTGTGTGGCGTTTGCTAATACTGATATTAGAGGACCAGGGAGTGGTTGTGCTATTTGGTTTGGGGATCTTGTTGATATCAAAGTTGTTCGAAAAGGAGGCCAGGATTTGTATGTTAGAATGTTGGCTTCTGAATTGGAGACAAAGAAGACGAGTTCGGTTGTCATCGGCGTTATCGTCGGAGCGGCGATTCTGGCGATTGCTGGTCTGGCTTTGATTGGGTTTTACCTTATCAGAAGCAGGAGGAGAAGTCTCGAAGGTGTAGGCAAGGATCTGGAAGGGCAAGAAGAAGATTTGGAGCTCCCAATAGTCGACTTAACGACAATATCTAATGCCACAGACAATTTTTCGAACTCCAACAAGCTTGGAGAAGGTGGTTTTGGTGCAGTCTTTCGGGGTAGACTTGGAGATGGACAAGAAATTGCAGTTAAGAGACTTTCTAGCTATTCAAGACAAGGGACTGATGAATTCAAGAATGAAGTGATACTCATTGCCAAACTTCAACATAGAAATCTTGTAAAACTTTTGGGTTGTTGCATACAAGGAGAGGAAAAGATGTTGATTTATGAGTACATGCCTAATAAGAGTTTGGACTCCTTCATTTTTGATCCTGCTAGAAAGAAGCTTTTGGATTGGTCGAAAAGATTCAATATCATATGCGGAATAGCTCGAGGGATTCTTTACCTTCATCAAGATTCGAGATTGAGGATTATACATAGAGATTTAAAAGCAAGCAATGTCTTGCTTGATATTGACATGAATCCAAAAATCTCGGATTTTGGAATGGCTAGAACGTTTGGAGGGGACCAAACCGAAGGAAATACTAGGAGAGTGGTCGGAACATATGGGTATATGGCACCAGAGTACGCCATTGATGGGCAATTTTCCATCAAGTCAGACGTCTTCAGTTTTGGAATATTATTGTTGGAAATCATAAGTGGAGAGAAGAATAGAGGGTTTTTTCGTCCTAACCATGCTCTGAACCTGATTGGACATGCATGGAAGTTATGGAATGAAGGGAAGCCATTAGAGTTGATTGATGCAACCATTGGAGAATCTTATGCTCTATCTGAAGTGTTGAGATGCATTCATGTTAGCCTCTTGTGCTTGCAACAACTTCCCGAGGATAGACCAACCATGTCAAATGTAGTTCTAATGCTAAGTAGTGAGAGCTCATTGCCACAACCAAAACAACCAGGATTTTACATGGAAAGAGATTCTCTGGAAGCATTTTCTCTTGATGGCAAGAATGAATCTTCTACTACCAATGAATTAACTATTACCCTCTTGGAGGCTAGATAA | 2451 | 42.11 | MLKKTKMANASLTLFLSLSLFLFSSPSVAVDFIISSQNLTHGATLISAKEFFELGFFSPRNSTNRYLGIWYKIIPVRTIVWVANRENPITNSSAAVVLKINTTTSDLLLFENDAVVWVGKSLKPVKTPKLHLLDNGNLVLKDAESEKISWQSFDYPTDTLLPGMKLGWDFENRIQRRLSAWKSSDDPSPGSLTMEMMNTNYPEPAMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELTYSYELINSSLIGRMVLNQTLFRREAWLWSASENIWKLYATMPRDYCDTYGLCGAFGSCDIEQVPACQCLRGFHPKVQEKWNLMDYTEGCVRNKALNCSDKTGFAKLPGLKLPDTKQSWVNESMSLNECRDKCLRNCSCVAFANTDIRGPGSGCAIWFGDLVDIKVVRKGGQDLYVRMLASELETKKTSSVVIGVIVGAAILAIAGLALIGFYLIRSRRRSLEGVGKDLEGQEEDLELPIVDLTTISNATDNFSNSNKLGEGGFGAVFRGRLGDGQEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDSFIFDPARKKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKASNVLLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIISGEKNRGFFRPNHALNLIGHAWKLWNEGKPLELIDATIGESYALSEVLRCIHVSLLCLQQLPEDRPTMSNVVLMLSSESSLPQPKQPGFYMERDSLEAFSLDGKNESSTTNELTITLLEAR | 816 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 26537136 | 26541959 | - | ClCG05G015100.2 | Cla05g01568 | 273058 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g01568 | 816 | ProSitePatterns | Protein kinases ATP-binding region signature. | 505 | 527 | IPR017441 | GO:0005524 | |
| Cla05g01568 | 816 | Pfam | Protein tyrosine and serine/threonine kinase | 502 | 768 | IPR001245 | GO:0004672|GO:0006468 | |
| Cla05g01568 | 816 | SUPERFAMILY | Protein kinase-like (PK-like) | 484 | 770 | IPR011009 | - | |
| Cla05g01568 | 816 | Pfam | D-mannose binding lectin | 78 | 182 | IPR001480 | - | |
| Cla05g01568 | 816 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 29 | 813 | - | - | |
| Cla05g01568 | 816 | Pfam | PAN-like domain | 344 | 410 | IPR003609 | - | |
| Cla05g01568 | 816 | Gene3D | Transferase(Phosphotransferase) domain 1 | 575 | 781 | - | - | |
| Cla05g01568 | 816 | CDD | STKc_IRAK | 505 | 770 | - | - | |
| Cla05g01568 | 816 | PANTHER | - | 29 | 813 | - | - | |
| Cla05g01568 | 816 | SMART | ntp_6 | 345 | 424 | IPR003609 | - | |
| Cla05g01568 | 816 | CDD | B_lectin | 39 | 156 | IPR001480 | - | |
| Cla05g01568 | 816 | Pfam | S-locus glycoprotein domain | 215 | 322 | IPR000858 | GO:0048544 | |
| Cla05g01568 | 816 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 79 | 187 | IPR036426 | - | |
| Cla05g01568 | 816 | Gene3D | Hepatocyte Growth Factor | 340 | 425 | - | - | |
| Cla05g01568 | 816 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 620 | 632 | IPR008271 | GO:0004672|GO:0006468 | |
| Cla05g01568 | 816 | ProSiteProfiles | Protein kinase domain profile. | 499 | 776 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla05g01568 | 816 | PIRSF | SRK | 3 | 816 | IPR024171 | GO:0004674 | |
| Cla05g01568 | 816 | ProSiteProfiles | Bulb-type lectin domain profile. | 30 | 153 | IPR001480 | - | |
| Cla05g01568 | 816 | Gene3D | Phosphorylase Kinase; domain 1 | 470 | 574 | - | - | |
| Cla05g01568 | 816 | CDD | PAN_AP_plant | 342 | 423 | - | - | |
| Cla05g01568 | 816 | Pfam | Domain of unknown function (DUF3403) | 771 | 816 | IPR021820 | GO:0004674 | |
| Cla05g01568 | 816 | SMART | blect_4 | 36 | 156 | IPR001480 | - | |
| Cla05g01568 | 816 | Gene3D | - | 27 | 153 | IPR036426 | - | |
| Cla05g01568 | 816 | ProSiteProfiles | PAN/Apple domain profile. | 344 | 425 | IPR003609 | - | |
| Cla05g01568 | 816 | SMART | serkin_6 | 499 | 770 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g00145 | Cla-Chr2:1583759 | Cla05g01568 | Cla-Chr5:26537136 | 1.47E-160 | dispersed | |
| Cla03g00479 | Cla-Chr3:5329503 | Cla05g01568 | Cla-Chr5:26537136 | 2.19E-120 | dispersed | |
| Cla03g00480 | Cla-Chr3:5338000 | Cla05g01568 | Cla-Chr5:26537136 | 2.92E-108 | dispersed | |
| Cla03g00496 | Cla-Chr3:5524353 | Cla05g01568 | Cla-Chr5:26537136 | 0 | dispersed | |
| Cla03g00497 | Cla-Chr3:5538186 | Cla05g01568 | Cla-Chr5:26537136 | 0 | dispersed | |
| Cla03g00498 | Cla-Chr3:5550542 | Cla05g01568 | Cla-Chr5:26537136 | 0 | dispersed | |
| Cla03g00505 | Cla-Chr3:5585575 | Cla05g01568 | Cla-Chr5:26537136 | 0 | dispersed | |
| Cla05g01568 | Cla-Chr5:26537136 | Cla10g00596 | Cla-Chr10:8789884 | 3.77E-27 | dispersed | |
| Cla07g00571 | Cla-Chr7:9749949 | Cla05g01568 | Cla-Chr5:26537136 | 7.72E-101 | dispersed | |
| Cla02g00149 | Cla-Chr2:1605511 | Cla05g01568 | Cla-Chr5:26537136 | 1.61E-46 | transposed | |
| Cla04g01089 | Cla-Chr4:26060328 | Cla05g01568 | Cla-Chr5:26537136 | 1.26E-77 | transposed | |
| Cla09g00231 | Cla-Chr9:2360162 | Cla05g01568 | Cla-Chr5:26537136 | 4.64E-140 | transposed | |
| Cla01g02190 | Cla-Chr1:35927636 | Cla05g01568 | Cla-Chr5:26537136 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 80567 | PF07714 | PK_Tyr_Ser-Thr | 4.00E-48 | CL0016 | Cla | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g01568 | - | - | csv:101216184 | 1440.63 |