Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01571 ATGAAGAAGTGCGAGCTGTGTGGGCAGCAAGCGAGGATGTTCTGTGAGTCGGATCAGGCGAACCTATGTTGGGACTGCGACGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCATGTATGCCAGTCTCCGACTCCATGGGCTGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGGTGTGTCGATGTCCATGGTGGTAAATGCGAGCAAGGTGGATTTCAAGAGCGGCGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGATGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAGGAAGAGGATGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCTCCACCACCGCCTCCGACAGTAACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCATCGATCTCGATTCCGATGATGAAATCGAGTGTTCTTCTGCACCACAGAGTACAAGGCCATTTTTCAATGACGAAGCGACTTCCTCGAGTTCCCTTAGGCCACTGAAGCAAGCAAGAGTTACAGGACCGACCCAATCAGCCACATCCACTCCGGATGTTGAAGCTTGTAAAGCCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCAGATCAGAATCGTTGATTCTTCACTAACCACACAATGGAAGGTCCACGAAGCCGCTTTTTGGGGTTTTTGCATATTGAAGATGATACCCAACACCCAATACCGAACTGAAGGGTTTTTGATTAAGAATGGTCTTTTTGATTTGCCAATTCCTGTTAAGGTCAAATTGATGTGTATATGGATTATTGAGTGGTTCACATTTTCTCACTGTTTAGACTTCTCTGTTCATAACCATGACTACATTCAGGCCATGGGTTGA 1017 48.28 MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWAASGRKLTPTVSVCEGCVDVHGGKCEQGGFQERRRDNEEEVDGGDDFDDGEGFDSYEGGDSEEDDDGDEDEDEEEEDEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMREYGIDLDSDDEIECSSAPQSTRPFFNDEATSSSSLRPLKQARVTGPTQSATSTPDVEACKAELKSTAVVRSIQRLQNQIRIVDSSLTTQWKVHEAAFWGFCILKMIPNTQYRTEGFLIKNGLFDLPIPVKVKLMCIWIIEWFTFSHCLDFSVHNHDYIQAMG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26667556 26669639 + ClCG05G015130.2 Cla05g01571 273061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01571 338 MobiDBLite consensus disorder prediction 189 231 - -
Cla05g01571 338 MobiDBLite consensus disorder prediction 83 170 - -
Cla05g01571 338 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Cla05g01571 338 MobiDBLite consensus disorder prediction 187 231 - -
Cla05g01571 338 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Cla05g01571 338 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 238 - -
Cla05g01571 338 SMART bboxneu5 1 45 IPR000315 GO:0008270
Cla05g01571 338 MobiDBLite consensus disorder prediction 96 137 - -
Cla05g01571 338 CDD Bbox1_BBX-like 3 45 - -
Cla05g01571 338 PANTHER OS08G0178800 PROTEIN 1 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01571 - - - bhj:120086748 386.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00511 Cla-Chr3:5652925 Cla05g01571 Cla-Chr5:26667556 2.48E-28 dispersed
Cla05g01571 Cla-Chr5:26667556 Cla02g00307 Cla-Chr2:2983214 2.25E-10 dispersed
Cla01g02191 Cla-Chr1:35938087 Cla05g01571 Cla-Chr5:26667556 9.41E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g338 . . . . . Bpe08g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g01054 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01571 Cam05g1679 Cec05g1684 Cco05g1728 Clacu05g1670 Cmu05g1561 Cre05g1679 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61101 PF00643 zf-B_box 7.10E-06 No_clan Cla TR