Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01577 GCAGTCAACGGCGGCGGCTACACCACTCCTATACAACAAACCAAATCCGAAAGCCTCCAACACCAAAAATTCAGTCTCAAAACTTTCAACGTTTTACTCTCTCTCTCTAAATCTTCCTTTTCTTTCTTCTTTCCCCACCACTTCATGGCGGACTACGGCGGCCACAATCTGGAAGTGGATCCAAGAAGCGGCTTCTGCAAATCCACAAAAATCTTCCACAGCAAACGCCGCCCAATCCCACTTCCCCCTAACCAATCCCTCGATGCGACGACCTTTATCTCTTCCCGCCCTCACAACGGCAAAATCGCCCTCATCGACGCCACCACCGGCCAACAAATCACCTATTCCCACCTCTGGAACTCCGTCGACGCCGTAGCCTCTTCCCTTTCCGACATGGGCATCCGAAAAGGCCACGTCATCCTCCTCCTTTCCCCTAACTCCATTTACTTTCCCATTATTTGCCTCGCCGTCATGTCCATCGGCGCCGTCATCACCACCACAAATCCCCTCAACACCCCTCAAGAAATCGCCAAACAAATCGCCGATTCCAAACCCATTTTAGCCTTCACTACCCAACAACTAATCCCCAAAATCGCCGCTTCCAAATTGCCAATCGTCATAATCGACGGTCAAGTTCCAAAATCCCCAGTCAAAATCGTGTCGACATTGAGCGAAATGATGAGGGAAAAACCAAGTGAGAGTCGAATTAAGGAACGCGTGGAGCAAAACGACACAGCGACTCTGCTTTATTCATCTGGAACGACAGGGGCGAGCAAAGGCGTAGTGTCGTCTCACAAGAATTTAATTGCAATGGTTCAAGTGGTTGTGACGAGGTTCAAATTAAGCGAAGGGGAAGGGACTTTTATTTGTACGGTCCCAATGTTTCATATTTACGGCCTTGTGGCTTTCGCTACGGGGTTGCTCTCTTCGGGATCTACAATCGTTGTATTATCGAAATTTGAGATTCATGAAATGTTGTCGGCGATTGACAAGTACAAGGCCACGTATCTGCCTCTTGTGCCGCCGATTCTGGTGGCGCTCGTGAACGCCGCCGACCAGATAAAGGGCAAGTACGATTTGGGGTCGTTGCACACGGCGTTGTCCGGCGGAGCGCCGCTTGGGAAGGAGGTGATTGAGGGTTTTGTTGAGAAATATCCGAATGTCGCAATTCTTCAGGGTTATGGATTGACGGAATCCACCGGAATTGGGGCGTCCACCGATTCGCTGGAGGAGAGCCGCCGATACGGCACGGCGGGGCTTCTGTCGCCGAGCACTGAGGGCATGATTGTTGACCCGGAAACCGGCGAGGCTCTTCCCGTGAACCGGACCGGAGAACTTTGGCTTAGAGGGCCCACCGTAATGAAAGGGTACTTTGGTAACACGGAGGCCACAACCTCAACACTTGATTCAGAGGGATGGTTGAGAACCGGTGATCTGTGTTATATTGATGAAGATGGTTTTATTTTTGTAGTTGATAGGCTGAAGGAACTAATCAAATATAAGGGATACCAGGTGCCTCCTGCTGAATTAGAGGCGTTGTTGCTTACTCATCCTAATATCTCCGATGCAGCTGTGATTCCATATCCAGACAAAGAGGTTGGACAGTATCCGATGGCTTATGTGGTAAGGAAGGGTGGAAGCGACATTTCACATGAAGATGTAATGCAATTTGTGGCAAAACAGGTGGCGCCGTACAAAAGAATCCGGCGGGTGGCGTTCGTGGGTTCCATTCCCAAGAATCCGTCCGGCAAGATTCTTAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTGTGA 1797 50.03 AVNGGGYTTPIQQTKSESLQHQKFSLKTFNVLLSLSKSSFSFFFPHHFMADYGGHNLEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQQITYSHLWNSVDAVASSLSDMGIRKGHVILLLSPNSIYFPIICLAVMSIGAVITTTNPLNTPQEIAKQIADSKPILAFTTQQLIPKIAASKLPIVIIDGQVPKSPVKIVSTLSEMMREKPSESRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIDKYKATYLPLVPPILVALVNAADQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTVMKGYFGNTEATTSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPNISDAAVIPYPDKEVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRIRRVAFVGSIPKNPSGKILRKDLIKLATSKL 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26748390 26754153 + ClCG05G015210.1 Cla05g01577 273067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01577 598 PANTHER BNAA06G14440D PROTEIN 42 597 - -
Cla05g01577 598 SUPERFAMILY Acetyl-CoA synthetase-like 90 596 - -
Cla05g01577 598 Pfam AMP-binding enzyme 98 500 IPR000873 -
Cla05g01577 598 Gene3D - 69 495 IPR042099 -
Cla05g01577 598 CDD 4CL 81 590 - -
Cla05g01577 598 Gene3D - 496 597 IPR045851 -
Cla05g01577 598 Pfam AMP-binding enzyme C-terminal domain 509 584 IPR025110 -
Cla05g01577 598 ProSitePatterns Putative AMP-binding domain signature. 248 259 IPR020845 -
Cla05g01577 598 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 42 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00434 Cla-Chr1:4693647 Cla05g01577 Cla-Chr5:26748390 4.34E-60 dispersed
Cla03g00341 Cla-Chr3:3971460 Cla05g01577 Cla-Chr5:26748390 3.17E-118 dispersed
Cla05g01577 Cla-Chr5:26748390 Cla07g00213 Cla-Chr7:2301613 7.69E-158 dispersed
Cla06g00795 Cla-Chr6:10949308 Cla05g01577 Cla-Chr5:26748390 1.73E-15 dispersed
Cla11g01818 Cla-Chr11:31834166 Cla05g01577 Cla-Chr5:26748390 6.62E-44 dispersed
Cla05g01577 Cla-Chr5:26748390 Cla09g00323 Cla-Chr9:3124225 1.47E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01577 K10526 - csv:101221396 1012.29