Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01594 ATGGCTATGGATGATACCGAGAGCTGTAGTAGTAGACCGGCGGATGATTTTTCGGCTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCGCACGAAGCGGAGACCTGCCTTCCTGGTTTCGAGGATGAACTTTGGACTCATTTTCATCGACTTCCTTCTAGGTATGCTATGGACGTCAACGTAGAGAGGGCTGAAGATGTTCTCATGCACAAAAATCTTCTCTACATGGCACATGATCCTGCTACTCGACCAGCTATTGATGTCCGTCTCGTACAGGTTCATTCATCTCCTGGCAGAAACTTTGGCAAGTCCGTTCATTCAAACTTGAAGGAAAAAGTAAACCAGCGGTTTTCTGGTTATGACAGCAATCAGAGACATCACCCCCCACCAGCATTTGGTTCAACAACAGAGGTCGAATATAGTTTTGACACCAACCAATTACATGATATAGACCAACCTGGCATTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCGCATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAAGATATACTCGCAGACGAAATATCAAAGATTCAGAAAAGGCATCCTCTATTTACACCTTGCATCTTCCGTACTGGGAAGCAAGACAAAATTGGAATCCAGTTCATCACAAAGTATGTCAACATTCCAAGGGACGAAGTTGATGAATGGGAAATTGATGCAACCCTGCTAGTCTTTGAGAAGAAAATTGCGTCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTGGCTATTAAGGTTCTAAAAGATGACAACTTGAACGAGACTGTACGGCGGGAATTTGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCACACTTTTTCATTGTTACAGAATACATGTCTGGTGGAAGCATACACGACTTTTTACATCAACAAAAGGGTGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGACGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATTCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAGACCATATGATCGTAAAGCTGATGTTTATAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATGAGAACTTGACTCCGTTACAAGCAGCAATTGGCGTGGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGTATGCTCATCCAATGATCGTGGATTTGCTCAAGAAATGCTGGCTGCAGGATCCATCTTTGAGACCCGAATTCTCAGAAATTACGAGACTTCTACAGCAGACATTGCTGAAGGAGGTACCATCTGGAAGATGA 1644 43.25 MAMDDTESCSSRPADDFSAQTWRQKQKVGVYDEVLRRLRLSHEAETCLPGFEDELWTHFHRLPSRYAMDVNVERAEDVLMHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNFGKSVHSNLKEKVNQRFSGYDSNQRHHPPPAFGSTTEVEYSFDTNQLHDIDQPGIFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILADEISKIQKRHPLFTPCIFRTGKQDKIGIQFITKYVNIPRDEVDEWEIDATLLVFEKKIASGSLSDLYKGTFYGQDVAIKVLKDDNLNETVRREFAQEIHIMRKLRHKNVVQFIGASTRPPHFFIVTEYMSGGSIHDFLHQQKGVLSFPSLLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHRPYDRKADVYSFGIVLWELLTGQLPYENLTPLQAAIGVVQKGLRPKIPRYAHPMIVDLLKKCWLQDPSLRPEFSEITRLLQQTLLKEVPSGR 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27021993 27028198 - ClCG05G015380.2 Cla05g01594 273084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01594 547 Coils Coil 223 243 - -
Cla05g01594 547 SMART serkin_6 286 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01594 547 Pfam Protein tyrosine and serine/threonine kinase 287 534 IPR001245 GO:0004672|GO:0006468
Cla05g01594 547 CDD STKc_MAP3K-like 292 535 - -
Cla05g01594 547 Gene3D Phosphorylase Kinase; domain 1 273 364 - -
Cla05g01594 547 SUPERFAMILY ACT-like 171 238 IPR045865 -
Cla05g01594 547 Gene3D Transferase(Phosphotransferase) domain 1 365 545 - -
Cla05g01594 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Cla05g01594 547 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 537 - -
Cla05g01594 547 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE 12 537 - -
Cla05g01594 547 SUPERFAMILY Protein kinase-like (PK-like) 266 534 IPR011009 -
Cla05g01594 547 ProSiteProfiles Protein kinase domain profile. 286 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01594 547 ProSiteProfiles ACT domain profile. 173 249 IPR002912 -
Cla05g01594 547 Gene3D - 171 244 - -
Cla05g01594 547 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672|GO:0006468
Cla05g01594 547 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672|GO:0006468
Cla05g01594 547 PRINTS Tyrosine kinase catalytic domain signature 443 453 IPR001245 GO:0004672|GO:0006468
Cla05g01594 547 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672|GO:0006468
Cla05g01594 547 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01888 Cla-Chr2:34064488 Cla05g01594 Cla-Chr5:27021993 6.82E-41 dispersed
Cla04g00964 Cla-Chr4:24754951 Cla05g01594 Cla-Chr5:27021993 7.70E-66 dispersed
Cla05g00127 Cla-Chr5:1208568 Cla05g01594 Cla-Chr5:27021993 9.76E-28 dispersed
Cla05g00503 Cla-Chr5:4650202 Cla05g01594 Cla-Chr5:27021993 6.28E-18 dispersed
Cla05g01594 Cla-Chr5:27021993 Cla10g00044 Cla-Chr10:506616 0 dispersed
Cla05g01617 Cla-Chr5:27507067 Cla05g01594 Cla-Chr5:27021993 4.23E-51 dispersed
Cla11g01429 Cla-Chr11:27854706 Cla05g01594 Cla-Chr5:27021993 2.26E-60 dispersed
Cla05g01594 Cla-Chr5:27021993 Cla01g01294 Cla-Chr1:26249281 6.01E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80569 PF07714 PK_Tyr_Ser-Thr 8.00E-72 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01594 - - cpep:111789352 954.896