Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g01605 | ATGGACGGCTTTAAATATGCAGGGGACTCTGTTCCACTTCATCACTTGATCACTTCTTCTTCATCCGCCATTTCCAATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTGCTTTCAATGGCTCAAACCACGCCCAATCACACTCAGACAGTCTCCGGTTGGGCAGCCCATGATTCTTCCGGCAAGATCAGTCCGTATACTTTCAAACGCAGAGAAAACGGCCCCGAGGACGTGACGATAGAGATTTTGTACTGTGGAATATGCCATACCGATATTCACTACGCCAAAAACGAGTGGGGCATCACCATGTATCCTGTAGTTCCCGGGCATGAGATGACAGGGGTAATCACGAAAGTGGGAAGCAACGTGGAGAAGTTCAAAATAGGGGACAGAGTGGGGGTTGGTTGTATAGCTGCTTCCTGTTTGAACTGCGAGTTTTGTCAAGATTCCCAAGAAAACTACTGTGAGAATTTGCAGTTTACATACAACGGAATCTTCTGGGATGGGAGCATAACTTACGGGGGATACTCCAAAATGTTTGTTTCAGATCAGAGGTACGTGGTGCACATACCTGAAAGCCTGCCAATGGACGCAACAGCGCCGTTGCTGTGTGCCGGAATAACAGTGTTCACGCCGATGAAAGATCTCGGCCTGATCGAGTCAGCGGGAAAGAAGGTGGGAGTGGTGGGGCTTGGAGGTCTGGGCCACATAGCAGTAAAATTTGCAAAGGCGTTTGGACACCATGTGACTGTGATCAGCACCTCTGCTTCAAAGGAACAAGAAGCTAAGGAGCGGCTTGGCGCTGACGATTTCATAGTCAGTAAAGATCCTGAGCAAATGCAGAGTTATAAGAGGACGTTGGATTTCATATTGGACACAGTGTCGGCGCAGCACTGTATTGGACCAATCTTAGAACTGCTAAAAGTGAATGGGACATTGTCCATTGTGGGAGCTCCAGACAAGCCCATTCAGTTGCCCTCTTTTCCTTTAATATTTGGGAAGAGGACAGTGAAGGGAAGCATAATAGGTGGAATACAAGAGACACAAGAGATGATGGATTTGTGTGGGAAATACAAAATTACAAGTGATATTGAAGTGATTAAGCCAGAAGATATCAACCATGCTATGGACCGTCTTCTCAAAAGCGATGTTCGATATCGATTTGTCATTGACATTGCCCAAAACATAATCCAATAA | 1203 | 46.22 | MDGFKYAGDSVPLHHLITSSSSAISNSFSLSLSLSLSRLLSMAQTTPNHTQTVSGWAAHDSSGKISPYTFKRRENGPEDVTIEILYCGICHTDIHYAKNEWGITMYPVVPGHEMTGVITKVGSNVEKFKIGDRVGVGCIAASCLNCEFCQDSQENYCENLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDATAPLLCAGITVFTPMKDLGLIESAGKKVGVVGLGGLGHIAVKFAKAFGHHVTVISTSASKEQEAKERLGADDFIVSKDPEQMQSYKRTLDFILDTVSAQHCIGPILELLKVNGTLSIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYKITSDIEVIKPEDINHAMDRLLKSDVRYRFVIDIAQNIIQ | 400 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 27322767 | 27325390 | - | ClCG05G015500.1 | Cla05g01605 | 273095 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g01605 | 400 | Gene3D | - | 56 | 394 | - | - | |
| Cla05g01605 | 400 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 111 | 125 | IPR002328 | GO:0008270|GO:0016491 | |
| Cla05g01605 | 400 | Gene3D | - | 207 | 364 | - | - | |
| Cla05g01605 | 400 | CDD | CAD1 | 55 | 393 | - | - | |
| Cla05g01605 | 400 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 196 | 362 | IPR036291 | - | |
| Cla05g01605 | 400 | SUPERFAMILY | GroES-like | 58 | 221 | IPR011032 | - | |
| Cla05g01605 | 400 | SMART | PKS_ER_names_mod | 63 | 392 | IPR020843 | GO:0016491 | |
| Cla05g01605 | 400 | Pfam | Zinc-binding dehydrogenase | 235 | 356 | IPR013149 | - | |
| Cla05g01605 | 400 | Pfam | Alcohol dehydrogenase GroES-like domain | 78 | 191 | IPR013154 | - | |
| Cla05g01605 | 400 | PANTHER | CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED | 42 | 397 | - | - | |
| Cla05g01605 | 400 | PANTHER | ALDEHYDE REDUCTASE | 42 | 397 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g00079 | Cla-Chr2:827566 | Cla05g01605 | Cla-Chr5:27322767 | 9.51E-142 | dispersed | |
| Cla02g00080 | Cla-Chr2:841745 | Cla05g01605 | Cla-Chr5:27322767 | 5.14E-141 | dispersed | |
| Cla05g01102 | Cla-Chr5:11409366 | Cla05g01605 | Cla-Chr5:27322767 | 1.99E-115 | dispersed | |
| Cla05g01605 | Cla-Chr5:27322767 | Cla04g00325 | Cla-Chr4:11325265 | 1.44E-21 | dispersed | |
| Cla09g00911 | Cla-Chr9:9509336 | Cla05g01605 | Cla-Chr5:27322767 | 2.32E-14 | dispersed | |
| Cla05g01605 | Cla-Chr5:27322767 | Cla02g00635 | Cla-Chr2:7140410 | 5.09E-112 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g01605 | K00083 | - | csv:101213170 | 670.233 |