Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01617 ATGGATAATGTGAGGACGGAGAACAACCAGCAGAGTAGACCAAACCCTTGGGTGTCTCAGAACTCATCGGAGGTGAATCCCCAACCCAGAGAAACCTCTCAATCTCGAAGATACTCTCCAAGCTTGTGCAACTGTGTAGGGATGGGAACAAACGTCTCGAGCAATAGACGTCAACGCTCATCTGAGATGCTGGAATTAAAGGTGGCAGAATTGGAGAGGGAACTACTGAAGCAGAGAGAAATCCAGCTTATCTTTAAGAAGAGGATGGATAGAGCACAAGATTCTCTCAAGTGCTTCCTAGAGAAAGCCCAGGACCGTGGATTCTTGCACCTCATAATTGGGAACAGAGACAATGGCGATGATGACGGCGATGGCAGCCCAAATTGCATTCAAAGTGCTGGTTCCAGCCCCGGAATGCCCTCCTCAAGCCATCCGTTTGCAGACCTACAGCCACTCATCGAGCAAGCCAAGCTCCATGGATGGTACATCGAACCACATGAGATTGAACTGAGGGAGAAGATAGGGCAAGGGACAACGGCCAACATATACAAGGCAACATGGAGGGGTATTGACGTTGCAGTGAAATGCCTTAACCAAGACTTCTTCTGCTCGAATGAGTGTGGCGTATCTTACTTCGCACAGGAGCTAGAGACGCTCTGTCGACAGCGCCACCGGTTCGTGCTGCAACTGATGGGAGCATGTCTCCAGCCACCGGGTTGCGGGTGGATTGTAACGGAACATTTAAGGATGACATTGCAGGAGTGGCTACATGGGCCAGGGAAGAGGAAGAAAGAGAGGGCAATTCCTCTGCCTCCATTTCAAGAGAGGTTGTTGAAGGCACTTGAAATATCTCAAGGGATGCAGTATCTTCATGAACAGAAGCCAAGAGTCATACACCGTGATTTGAAGCCTAGCAATATTTTCTTGGATGATGCTTTTCATGTGAGAGTTGCTGATTTTGGCCATGCCCGCTTCCTCCACGACAGACATATGGCTCTCACCGGAGAAACAGGCAAGTTTGCAGGAACCTATGTTTATATGGCACCAGAGGTGATTCGATGCGAGCCTTACACAGAAAAGAGCGATATATATAGTTTTGGTATCATATTAAACGAACTTATAACAGGAAAATATCCTTATATTGAGATTGATTATTCTCCATTCAAGATAGCTATGGAAGTTGGAGAAGGCAACCTGAGACCGGAGCTTCCGGTGGACGAGGATGAGAGCCTAAAGGAGCTTTTAGATCTGATTTGCGCATGTTGGAATGGAAATCCCACCCTCCGACCATCTTTTGCAACAATAACGGGTTGCTTGAAGAAAATTCAAAATTAA 1335 47.19 MDNVRTENNQQSRPNPWVSQNSSEVNPQPRETSQSRRYSPSLCNCVGMGTNVSSNRRQRSSEMLELKVAELERELLKQREIQLIFKKRMDRAQDSLKCFLEKAQDRGFLHLIIGNRDNGDDDGDGSPNCIQSAGSSPGMPSSSHPFADLQPLIEQAKLHGWYIEPHEIELREKIGQGTTANIYKATWRGIDVAVKCLNQDFFCSNECGVSYFAQELETLCRQRHRFVLQLMGACLQPPGCGWIVTEHLRMTLQEWLHGPGKRKKERAIPLPPFQERLLKALEISQGMQYLHEQKPRVIHRDLKPSNIFLDDAFHVRVADFGHARFLHDRHMALTGETGKFAGTYVYMAPEVIRCEPYTEKSDIYSFGIILNELITGKYPYIEIDYSPFKIAMEVGEGNLRPELPVDEDESLKELLDLICACWNGNPTLRPSFATITGCLKKIQN 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27507067 27511993 + ClCG05G015650.1 Cla05g01617 273107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01617 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Cla05g01617 444 MobiDBLite consensus disorder prediction 1 42 - -
Cla05g01617 444 SMART serkin_6 168 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01617 444 ProSitePatterns Protein kinases ATP-binding region signature. 174 195 IPR017441 GO:0005524
Cla05g01617 444 MobiDBLite consensus disorder prediction 118 143 - -
Cla05g01617 444 SUPERFAMILY Protein kinase-like (PK-like) 147 436 IPR011009 -
Cla05g01617 444 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 34 444 - -
Cla05g01617 444 MobiDBLite consensus disorder prediction 128 143 - -
Cla05g01617 444 Coils Coil 61 81 - -
Cla05g01617 444 Pfam Protein kinase domain 170 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01617 444 ProSiteProfiles Protein kinase domain profile. 168 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01617 444 Gene3D Transferase(Phosphotransferase) domain 1 249 444 - -
Cla05g01617 444 PANTHER OS09G0443600 PROTEIN 34 444 - -
Cla05g01617 444 CDD STKc_MAP3K-like 174 436 - -
Cla05g01617 444 Gene3D Phosphorylase Kinase; domain 1 151 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01617 - - - mcha:111008212 767.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01617 Cla-Chr5:27507067 Cla05g01594 Cla-Chr5:27021993 4.23E-51 dispersed
Cla05g01617 Cla-Chr5:27507067 Cla04g00964 Cla-Chr4:24754951 5.59E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g143 . . . . . Bpe02g00332 . . . . . . Car09g00308 . . . Cpe06g00255 . . . . . . . Cla05g01617 Cam05g1730 Cec05g1735 Cco05g1791 Clacu05g1719 Cmu05g1603 Cre05g1730 Cone4ag1692 . . . . . . . Blo17g00274 . . . Bpe14g00279 . . Bma02g00338 . . Cmo09g00582 Cma09g00361 . . . . . Bhi09g03092 . . . . . . . . . . . . . . . . Cme07g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010809 0 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80571 PF00069 Pkinase 1.40E-44 CL0016 Cla PK