Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01618 ATGGATGTGAACGGCAATAAACCTTTGAAATCTGTTCAAAGAAGTTCTTCTCAGAAGGAAAGTGAAAATGGTGGCCAAGTTGTGGTTGAAATTAGGAGCGTTGTTTCTTCCAAAGAAACCAGAGATGAAAATGGCTACTCTGTACCGAAGCCAAACAGAGTCGGTTCGCAGGCCACAGAGCCGACCGATTCGAGCATCCCCAGTTCAAATGGAACCCTCACGCACAGAAGATCTCTTAAAAGATCAATCCTGTCAAGACCCAAATCAAGATTTGGGGAACAGCCACGTTACCTCGATTCAGATATGTTTGAGGAGAATCGTTCGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAAGATCTGCTCTGGCCCAAACTGAGAAAGAAGATGATGAGGGAATTGTCAAGATAGAGCCGTTGGACAAAAAGCACGAGAAAGTGAAGGTGAAGACATTGATTAAGTTAGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGTTTGACTGTTAACCGTTTGAAGAATCACTTCTTTTGGGGATTGAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTGTGCATATTGTTGTCAGTTTGATTGAGGGGAACTTTTTGCTTAAGAAAAAAGTGCTTTATTTTGTTCATGGATTGAAGAAGAGTGTCCAAGTGACCATTTGGTTGGCATTGGTTCTTGTAACATGGGTGTCCCTGTTCGATCGGAGAAACCATAGGAATTCTAATTTTGGAATCACTGGGAAGATTTTGGATACTATTACATGGACTCTGGTAGCCCTTCTTGTAGGGACATTCCTGTGGTTGATAAAAACATTGTTGTTGAAAATACTGGCCTCCAAGTTCCATAAGAACCAATTTTTCGACAGAATTCAGGAATCCCTTTTCCATCATCATGTTCTACAAACCCTCTTGAAGTCTCCATTAATGGAGGGGGATGGAAGTACTGCCAAGTTCAGCTGTTGTCAATTTACTTTGGAGAGTAAAAAATCAGAACATAAGAAGGTGATTGACATGGGAAAGATTCACCAGCTGCAGCGAGAGAAGGTAACTGCTTGGACAATGAAGGTGTTGATCGAGGCAGTTACAAGTTCGGAGATGTCAATCTCACAAATGCTCGATGAAAGCTACCACAATGTTGCTGATGGTGAGATCATTGATGAAATGGAAATTGCCAGTGCCGTTGCCTGCAAGATCTTAAAAAATGTTGCTCTTGGAAAAAAGTTCATACAAGAAGAGGATCTTATGAAATTCATGGTCAAAGAAGAAATTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAGATTGATGAGAAAGCTCTAAGAAAATGGGTGGTGAAGGTTTATCAAGAGAGGAAAACTCTAGCACATGCCTTGAATGACACTAAAACAGCTGTGAAGCAATTGAATAATTTGGTAACAGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTCGTTTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGGGACCGTTGTGCCGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACCAAGCCCATCACTAACTACTACAGAAGTCCATACATGAGCGACACAATCGAATTCTCGATCGGTTTCACGACACCACTAGAGAGGATTGGAGCCATGAAAGAGAGAATAAAAAGGTATTTGGAGAAGAATCCACAACACTGGTATCCAAATCATAGTGTGGTGGTGAAAGAGATCGAAAACGTGAATAAGATTAAGATCGCTCTTTATATGAATCACACGATGAATTTTCAAGACTGGAGTGAGAAGAACCGACGAAGATCCGAGCTCTTGATGGAGCTGAAGAAAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAATAGTTCATCTCATTTCAGTTCAGGAGCAGTAA 2139 40.81 MDVNGNKPLKSVQRSSSQKESENGGQVVVEIRSVVSSKETRDENGYSVPKPNRVGSQATEPTDSSIPSSNGTLTHRRSLKRSILSRPKSRFGEQPRYLDSDMFEENRSSLREQIGATSSRRSALAQTEKEDDEGIVKIEPLDKKHEKVKVKTLIKLVGVFCIIGCLVASLTVNRLKNHFFWGLRVWKWCLLATVILCGMIFTHWVVHIVVSLIEGNFLLKKKVLYFVHGLKKSVQVTIWLALVLVTWVSLFDRRNHRNSNFGITGKILDTITWTLVALLVGTFLWLIKTLLLKILASKFHKNQFFDRIQESLFHHHVLQTLLKSPLMEGDGSTAKFSCCQFTLESKKSEHKKVIDMGKIHQLQREKVTAWTMKVLIEAVTSSEMSISQMLDESYHNVADGEIIDEMEIASAVACKILKNVALGKKFIQEEDLMKFMVKEEIDLVLPHFEVDETRKIDEKALRKWVVKVYQERKTLAHALNDTKTAVKQLNNLVTALLIIVTAVIWLLLMEIATSKVLVFLLSQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCAVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPYMSDTIEFSIGFTTPLERIGAMKERIKRYLEKNPQHWYPNHSVVVKEIENVNKIKIALYMNHTMNFQDWSEKNRRRSELLMELKKIFEELKINYNLLPQIVHLISVQEQ 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27518640 27521801 + ClCG05G015660.1 Cla05g01618 273108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01618 712 MobiDBLite consensus disorder prediction 8 24 - -
Cla05g01618 712 MobiDBLite consensus disorder prediction 50 78 - -
Cla05g01618 712 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 708 IPR016688 -
Cla05g01618 712 SUPERFAMILY Sm-like ribonucleoproteins 539 599 IPR010920 -
Cla05g01618 712 Gene3D - 550 599 IPR023408 -
Cla05g01618 712 MobiDBLite consensus disorder prediction 1 97 - -
Cla05g01618 712 PIRSF Memb_At2g17000 3 711 IPR016688 -
Cla05g01618 712 Pfam Mechanosensitive ion channel 491 696 IPR006685 GO:0016020|GO:0055085
Cla05g01618 712 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 25 708 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01618 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101216955 1058.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01618 Cla-Chr5:27518640 Cla06g00802 Cla-Chr6:11118552 8.75E-169 dispersed
Cla05g01618 Cla-Chr5:27518640 Cla05g01622 Cla-Chr5:27554440 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57