Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01622 ATGGATGTGAACGCCAATAAACCTTTGCAATTTTTTCGAAGAAGTTCGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTATGGTTGAGATTAGCAGCGTTGAAAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTCGCAAGAGCCGACCGATTCAAGCATTGGCTATGGCTCCGATTCACCACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCTAGTTCAAATGGAACCCTCACGCCCAGAAAATCTCTCAGAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGACCAGCCTGGTTATATCGATTCAGACATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCTCAACCTGAGGAAGAAGATGATGAGGAAATCTTCAAGATAGAGCAGTTGAATAATAAGCATAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACAATTCCGAGTTCGAGGATCACTACAAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTTATAGGAGCATTCTTGTGGTTGGTAAAAACACTGTTGCTGAAAATACTGGCCTCTAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCAAGGCCTCCATTAATGGAGGGAGCTGAAATTACTCCCAAGTCCAGCAGTGGTAGACTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAGATGTCGATCTCACAAATACTTGATGAAAGCTACCAAGATGTTGCTGATGGCGAGATCACAGATGAGATGGAAGTTGCCAGAGCCGCTGCTTACAAGATATTCAACAATGTTGCTCTTCATGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAAATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAGGCAATTGAATAATTTAGTAACGGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGTGACCGTTGTGTTGTCGATGGCGTCCAGTGTAATCTGCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACCAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGCGACACTGTTGAATTCTCAATCGGTTTCGCAACGCCATTGGAGAGGATTGGGCTCTTGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACATTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATCGAAAGCGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTACATCTCTTCCCAGTTGGGGGGCACTGA 2190 41.74 MDVNANKPLQFFRRSSSQKETENGGQVMVEISSVENGYSVPKQNRVDSQEPTDSSIGYGSDSPLAPTANKPPKIPSSNGTLTPRKSLRRSILSKPKSRFGDQPGYIDSDMFEENHLSLRDQIGATSSRSSTLNTPKAQPEEEDDEEIFKIEQLNNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTHWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDRRNHTIPSSRITTKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAEITPKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQDVADGEITDEMEVARAAAYKIFNNVALHGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVKVYQGRKTLAHALKDTKTAVRQLNNLVTALLIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCVVDGVQCNLQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFATPLERIGLLKEKIKRYLEKNPQHWHPNHSVVVQEIESVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVGGH 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27554440 27557888 + ClCG05G015680.1 Cla05g01622 273112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01622 729 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 723 IPR016688 -
Cla05g01622 729 MobiDBLite consensus disorder prediction 1 105 - -
Cla05g01622 729 MobiDBLite consensus disorder prediction 71 87 - -
Cla05g01622 729 Gene3D - 563 616 IPR023408 -
Cla05g01622 729 MobiDBLite consensus disorder prediction 9 62 - -
Cla05g01622 729 MobiDBLite consensus disorder prediction 124 144 - -
Cla05g01622 729 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 25 723 - -
Cla05g01622 729 PIRSF Memb_At2g17000 5 726 IPR016688 -
Cla05g01622 729 Pfam Mechanosensitive ion channel 504 713 IPR006685 GO:0016020|GO:0055085
Cla05g01622 729 SUPERFAMILY Sm-like ribonucleoproteins 552 616 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01085 Cla-Chr2:22994722 Cla05g01622 Cla-Chr5:27554440 3.25E-166 dispersed
Cla03g01465 Cla-Chr3:30176717 Cla05g01622 Cla-Chr5:27554440 0 dispersed
Cla05g01622 Cla-Chr5:27554440 Cla06g00802 Cla-Chr6:11118552 8.13E-179 dispersed
Cla05g01618 Cla-Chr5:27518640 Cla05g01622 Cla-Chr5:27554440 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01622 K22048 - csv:101217197 1148.27