Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01622 ATGGATGTGAACGCCAATAAACCTTTGCAATTTTTTCGAAGAAGTTCGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTATGGTTGAGATTAGCAGCGTTGAAAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTCGCAAGAGCCGACCGATTCAAGCATTGGCTATGGCTCCGATTCACCACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCTAGTTCAAATGGAACCCTCACGCCCAGAAAATCTCTCAGAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGACCAGCCTGGTTATATCGATTCAGACATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCTCAACCTGAGGAAGAAGATGATGAGGAAATCTTCAAGATAGAGCAGTTGAATAATAAGCATAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACAATTCCGAGTTCGAGGATCACTACAAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTTATAGGAGCATTCTTGTGGTTGGTAAAAACACTGTTGCTGAAAATACTGGCCTCTAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCAAGGCCTCCATTAATGGAGGGAGCTGAAATTACTCCCAAGTCCAGCAGTGGTAGACTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAGATGTCGATCTCACAAATACTTGATGAAAGCTACCAAGATGTTGCTGATGGCGAGATCACAGATGAGATGGAAGTTGCCAGAGCCGCTGCTTACAAGATATTCAACAATGTTGCTCTTCATGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAAATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAGGCAATTGAATAATTTAGTAACGGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGTGACCGTTGTGTTGTCGATGGCGTCCAGTGTAATCTGCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACCAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGCGACACTGTTGAATTCTCAATCGGTTTCGCAACGCCATTGGAGAGGATTGGGCTCTTGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACATTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATCGAAAGCGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTACATCTCTTCCCAGTTGGGGGGCACTGA 2190 41.74 MDVNANKPLQFFRRSSSQKETENGGQVMVEISSVENGYSVPKQNRVDSQEPTDSSIGYGSDSPLAPTANKPPKIPSSNGTLTPRKSLRRSILSKPKSRFGDQPGYIDSDMFEENHLSLRDQIGATSSRSSTLNTPKAQPEEEDDEEIFKIEQLNNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTHWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDRRNHTIPSSRITTKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAEITPKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQDVADGEITDEMEVARAAAYKIFNNVALHGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVKVYQGRKTLAHALKDTKTAVRQLNNLVTALLIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCVVDGVQCNLQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFATPLERIGLLKEKIKRYLEKNPQHWHPNHSVVVQEIESVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVGGH 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27554440 27557888 + ClCG05G015680.1 Cla05g01622 273112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01622 729 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 723 IPR016688 -
Cla05g01622 729 MobiDBLite consensus disorder prediction 1 105 - -
Cla05g01622 729 MobiDBLite consensus disorder prediction 71 87 - -
Cla05g01622 729 Gene3D - 563 616 IPR023408 -
Cla05g01622 729 MobiDBLite consensus disorder prediction 9 62 - -
Cla05g01622 729 MobiDBLite consensus disorder prediction 124 144 - -
Cla05g01622 729 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 25 723 - -
Cla05g01622 729 PIRSF Memb_At2g17000 5 726 IPR016688 -
Cla05g01622 729 Pfam Mechanosensitive ion channel 504 713 IPR006685 GO:0016020|GO:0055085
Cla05g01622 729 SUPERFAMILY Sm-like ribonucleoproteins 552 616 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01622 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101217197 1148.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01085 Cla-Chr2:22994722 Cla05g01622 Cla-Chr5:27554440 3.25E-166 dispersed
Cla03g01465 Cla-Chr3:30176717 Cla05g01622 Cla-Chr5:27554440 0 dispersed
Cla05g01622 Cla-Chr5:27554440 Cla06g00802 Cla-Chr6:11118552 8.13E-179 dispersed
Cla05g01618 Cla-Chr5:27518640 Cla05g01622 Cla-Chr5:27554440 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g00153 . 134 527 Mechanosensitive Ion Channel Family AT4G00290 66.5 6.7e-153 537.7
Cla08g01164 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Cla10g00731 . 116 789 Mechanosensitive Ion Channel Family AT5G10490 55.4 4.9e-191 664.8
Cla08g01164 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.9e-199 692.2
Cla10g00731 . 104 566 Mechanosensitive Ion Channel Family AT1G58200 65.0 2.5e-171 599.4
Cla02g01085 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.8 3.2e-259 891.7
Cla02g00401 . 91 947 Mechanosensitive Ion Channel Family AT1G53470 51.2 2.4e-238 822.4
Cla02g01085 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.3 1.1e-245 846.7
Cla02g01085 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.4 1.2e-279 959.5
Cla02g00401 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.8 1.1e-269 926.4
Cla02g01085 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 4.3e-237 818.1
Cla02g00401 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 1.1e-221 766.9
Cla02g01085 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.3 4.3e-163 572.0
Cla05g01622 . 62 723 Mechanosensitive Ion Channel Family AT5G12080 57.8 1.7e-200 696.4
Cla03g01465 . 110 822 Mechanosensitive Ion Channel Family AT5G12080 52.2 2.7e-195 679.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57