Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01630 ATGAAGTCTACGAAGAGGGCAGCAATGGCACTTCCTGTTGAGCTTGTTGTTTTGGCTTTTCTCTTCTGTGCTACCGTTGGTGTGGTGGACTCTGATGATGGAGCAACGTTGTTGGAGATAAAGAAATCATTCAGGGACGTGGATAATGTTCTTTATGATTGGACAAGCTCACCTTCATCAGACTACTGTATGTGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTATCTCTCTTAATCTTTCAGGTCTCAATTTGGATGGGGAAATTTCTCCTTCAGTCGGGAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGGGATTGCTTTTCGTTAATAAATCTGGATTTGTCGTTTAATGAGATTTATGGAGACATACCATTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTTGTTCTGAAAAATAATCGACTGATTGGGCCGATCCCATCTACTTTATCTCAGATTCCAAACTTGAAGGTCTTGGATCTGGCACAGAATAATCTTAGTGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTTTGCGTGGCAACAATTTGGTGGGCACACTATCTCCAGATATGTGTCAGCTGACTGGTTTATGGTATTTCGATGTGAGAAACAACAGTTTAACTGGCGGCATACCCCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACTTGTCATACAATCATCTCACTGGAGAGATACCATTTAACATTGGTTTCCTTCAAGTAGCCACGTTGTCCTTACAGGGTAATCAGCTATCAGGTCCCATTCCACCCGTAATTGGTCTGATGCAGGCGCTTGCTGTGCTAGATTTGAGTTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACATATACCGAGAAGCTGTACTTGCATAGTAACAAGCTCACTGGGCCCATTCCAGCAGAGCTTGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGAAAACTCACCGATTTATTTGATCTAAATGTTGCTAATAACAATCTCGGAGGGCCTATCCCTGACAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCCCCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCCACGAATGATCTACAAGGTCCTATTCCAGTTGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAATTAGTGGCACAATTTCTTCCTCCTTCGGTGATCTGGAACATCTGCTAAAGCTAAATTTAAGTAGGAATCATTTGACGGGATTTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAACCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACCTGACGTCGCTGATTAGCTGCCTAAGTCTTACTGAATTAAATGTATCTTATAACAATCTAGCTGGTGAGATTCCGACAAGCAACAACTTCTCTAGATTTTCATCTGACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGCCATGAACCTCATACGACAGAGCGAGTGACCATATCTAAAGCTGCTATCCTGGGAATTGCTCTCGGTGCCCTTGTAATCCTTCTAATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCTTTTCCAGATGGATCACTTGACAAACCAGTTACGTACTCCACTCCCAAGCTAGTGATCCTTCACATGAACATGGCCCTTCACGTTTATGAGGATATTATGAGGATGACTGAAAATTTGAATGAAAAGTACATTATTGGACATGGAGCTTCAAGCACAGTCTACAAGTGTGTACTGAAGAATTGTAAACCTGTGGCTGTCAAAAAGCTCTTTTCCCACCAGCCCCATAGCATGAAGGGATTCGAGACCGAACTGGAAACCGTGGGTAGCATCAAGCACAGAAATCTAGTAAGCCTCCAAGGATACTCCTTATCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGATCATCTACATGGGTCTAGCTCTACCAAGAAGAAAAAGCTTGACTGGGACACTCGGCTCAATATTGCCCATGGAGCAGCCCAGGGACTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTTAAGTCATCTAACATTTTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGTATTGCCAAGAGCTTATGCACCTCGAAGACATATACATCCACTTATATCATGGGAACCATTGGATACATAGATCCAGAGTATGCTCGGACTTCTCGACTTACTGAAAAGTCCGATGTTTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAACAGCCAACAATGCTGTAATGGAGACGGTTGATGCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTGGCTCTCCTTTGCACCAAGAGGCAGCCATCCGACCGACCAACAATGCACGAAGTAACACGCGTCATTGCGAGTCTTCTGCCCTCCGCCACAACACTAAAGCAAACACCAACCATAACATCCATGCCCCCATCTGCAAAATCCCCTTGCTACAAGGATGAATATGCAAATCTAAAAACGCCGCACGTGCTGAACTGCCCAACCATGAGCACCTCAGATGCCCAGCTCTTCCTCAAGTTCGGAGAGGTAATATCACAAAACAGTGAGTAA 2976 43.25 MKSTKRAAMALPVELVVLAFLFCATVGVVDSDDGATLLEIKKSFRDVDNVLYDWTSSPSSDYCMWRGVTCDNATLNVISLNLSGLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCFSLINLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGGIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGPIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSTNDLQGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDLTSLISCLSLTELNVSYNNLAGEIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHEPHTTERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLNEKYIIGHGASSTVYKCVLKNCKPVAVKKLFSHQPHSMKGFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDAEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIASLLPSATTLKQTPTITSMPPSAKSPCYKDEYANLKTPHVLNCPTMSTSDAQLFLKFGEVISQNSE 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27689448 27696341 + ClCG05G015780.2 Cla05g01630 273120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01630 991 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Cla05g01630 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 977 - -
Cla05g01630 991 Gene3D Ribonuclease Inhibitor 267 577 IPR032675 -
Cla05g01630 991 SUPERFAMILY L domain-like 57 308 - -
Cla05g01630 991 SUPERFAMILY Protein kinase-like (PK-like) 635 923 IPR011009 -
Cla05g01630 991 Pfam Protein kinase domain 659 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01630 991 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Cla05g01630 991 Pfam Leucine rich repeat 148 207 IPR001611 GO:0005515
Cla05g01630 991 Pfam Leucine rich repeat 435 494 IPR001611 GO:0005515
Cla05g01630 991 ProSiteProfiles Protein kinase domain profile. 657 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01630 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Cla05g01630 991 ProSitePatterns Protein kinases ATP-binding region signature. 663 686 IPR017441 GO:0005524
Cla05g01630 991 SMART serkin_6 657 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01630 991 ProSiteProfiles Leucine-rich repeat profile. 172 194 IPR001611 GO:0005515
Cla05g01630 991 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Cla05g01630 991 SMART LRR_typ_2 337 361 IPR003591 -
Cla05g01630 991 SMART LRR_typ_2 98 122 IPR003591 -
Cla05g01630 991 SMART LRR_typ_2 170 194 IPR003591 -
Cla05g01630 991 SMART LRR_typ_2 457 480 IPR003591 -
Cla05g01630 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 13 977 - -
Cla05g01630 991 Gene3D Ribonuclease Inhibitor 194 266 IPR032675 -
Cla05g01630 991 Gene3D Transferase(Phosphotransferase) domain 1 733 941 - -
Cla05g01630 991 CDD STKc_IRAK 663 925 - -
Cla05g01630 991 Gene3D Phosphorylase Kinase; domain 1 639 732 - -
Cla05g01630 991 SUPERFAMILY L domain-like 267 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01630 Cla-Chr5:27689448 Cla09g01283 Cla-Chr9:19222127 0 dispersed
Cla05g01630 Cla-Chr5:27689448 Cla01g01761 Cla-Chr1:32517304 4.65E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80572 PF00069 Pkinase 4.80E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01630 K20718 - csv:101214398 1865.51