Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01634 ATGCTGTCTCATTTGAGTAGAAATATGGGCTTACTCTGCAGCAGAAATCGTCAATACAACGAACAAGATGCTGAAGAGAATGCGCAGGCTGCAGAAATAGAGAGGCGGATTGTACAAGAAACAGAGGCTGAAAAACATATACAGAAACTTCTTCTGCTCGGTGCTGGAGAGTCTGGAAAATCCACCATTTTTAAGCAGGCAAGCTCTTTTATTCTTTGCCATCATAACCTGCAATGCCGCAATGAAATAAAATTGTTGTTCCAAACTGGGTTTGATGAGGCAGAGCTAAAGAGCTATATTCCAGTCATTCATGCAAATGTGTATCAGACTATAAAAGTATTACATGATGGTTCGAAGGAGCTCTCTCAAAATGACAAAGAGTTCTCGAAGTACATTTTATCCAGTGAAAATAAGGAAATTGGCAAGAAATTATCAGATATCGGAGGTAGATTGGATTACCCATGTTTGACTAGAGAGTGTGCACAGGATATAGAGACTCTTTGGAAAGATTCTGCGATTCAGGAAACGTATGCTCGCGGTAATGAACTACAGGTTCCGGATTGCACACATTATTTCATGGAAAATTTGCAAAGATTATCTGATGCAAATTACATTCCTACTAAGGAGGATGTACTCTACGCAAGAGTTCGTACAACAGGTGTTGTTGAAATCCAGTTTAGCCCCGTTGGTGAAAATAAAAAGAGCGGCGAAGTGTATAGACTGTTTGATGTTGGTGGACAGAGAAATGAGAGGAGAAAATGGATTCATCTTTTTGAAGGTGTTACAGCAGTAATCTTTTGTGCTGCTATTAGTGAGTATGATCAAACACTTTTTGAGGATGAACAGAAGAACCGAATGATGGAGACCAAGGAACTTTTTGAGTGGGTTTTGAAACAAGAGTGTTTTGAGAAAACGTCATTTATGCTTTTTCTCAACAAATTTGATATCTTCGAGAAAAAGGTTCTAAAAGTCCCTCTCAGTGTGTGTGAATGGTTCAAGGATTACGAGCCGGTTTCGACTGGGAAACAGGAGATCGAGCATGCCTATGAGTTTGTGAAGAAAAAATTTGAGGAGTTGTATTTTAAGAGCACGGCACCGGATCGTGTAGATCGGGTGTTTAAGGTATACAGAACCACTGCTCTTGATCAGAAACTTGTAAAGAAAACGTTCAAGCTCGTAGATGAAACTTTGAGGCGGCGAAATCTCTTTGAGGCTGGGTTATTGTGA 1227 39.93 MLSHLSRNMGLLCSRNRQYNEQDAEENAQAAEIERRIVQETEAEKHIQKLLLLGAGESGKSTIFKQASSFILCHHNLQCRNEIKLLFQTGFDEAELKSYIPVIHANVYQTIKVLHDGSKELSQNDKEFSKYILSSENKEIGKKLSDIGGRLDYPCLTRECAQDIETLWKDSAIQETYARGNELQVPDCTHYFMENLQRLSDANYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFEWVLKQECFEKTSFMLFLNKFDIFEKKVLKVPLSVCEWFKDYEPVSTGKQEIEHAYEFVKKKFEELYFKSTAPDRVDRVFKVYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27733881 27739386 - ClCG05G015820.1 Cla05g01634 273124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01634 408 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 9 408 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cla05g01634 408 ProSiteProfiles G-alpha domain profile. 46 408 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla05g01634 408 Coils Coil 16 41 - -
Cla05g01634 408 Pfam G-protein alpha subunit 30 396 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla05g01634 408 PRINTS Plant G protein alpha subunit signature 35 44 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cla05g01634 408 PRINTS Plant G protein alpha subunit signature 294 305 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cla05g01634 408 PRINTS Plant G protein alpha subunit signature 224 239 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cla05g01634 408 PRINTS Plant G protein alpha subunit signature 343 358 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cla05g01634 408 PRINTS Plant G protein alpha subunit signature 360 372 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cla05g01634 408 SUPERFAMILY Transducin (alpha subunit), insertion domain 91 216 IPR011025 GO:0007165
Cla05g01634 408 SMART galpha_1 27 407 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla05g01634 408 Gene3D - 92 217 IPR011025 GO:0007165
Cla05g01634 408 CDD G-alpha 48 402 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla05g01634 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 405 IPR027417 -
Cla05g01634 408 Gene3D - 49 396 IPR027417 -
Cla05g01634 408 PRINTS Alpha G protein (transducin) signature 261 289 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla05g01634 408 PRINTS Alpha G protein (transducin) signature 239 256 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla05g01634 408 PRINTS Alpha G protein (transducin) signature 204 226 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla05g01634 408 PRINTS Alpha G protein (transducin) signature 49 64 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla05g01634 408 PRINTS Alpha G protein (transducin) signature 307 316 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cla05g01634 408 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 9 408 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01634 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - csv:101216232 731.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01634 Cla-Chr5:27733881 Cla10g00122 Cla-Chr10:1232447 1.28E-56 dispersed
Cla05g01634 Cla-Chr5:27733881 Cla01g01617 Cla-Chr1:30911525 2.32E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44