Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01635 ATGGGTATGAAGAGGAAGATGACGTGGAAATCGATGATCATTCCGAGTTGTTACACGGCGGTGTCCGAGGACGACGAGCGGCGGCGGTTTTCCAAAAAAGGTTCGTCCCAGCGGCTGTCGCTGTCGGACGCGAGTAATCCGAGTTCGCCGTTGTCGATCGACGACTTGTCCAATTCCCTTGTCGGGCCGAAGCTTCATATTTTTTCATTTGCAGAACTTCGAACCATCACTCACAATTTTGCTTCCTCCAATTTGCTTGGTGAAGGCGGGTTCGGTCCGGTTTATAAGGGGTTCGTCGATGATAAAATCAAACCGGGTTTAGAAGCTCAGCCGGTCGCCGTTAAATTGCTCGACCTCGATGGATCCCAAGGCCATAAAGAATGGCTGGCAGAGATTATAATTTTGGGGCAAATGAGGCATCAAAATTTGGTGAAACTAATCGGTTACTGTTGGGAAGAAGAATACAGACTTTTGGTTTATGAGTATATGGCCAGAGGCAGTTTAGAAAACCAGCTATTCAGAAAGTATTCAGCTGCCTTGCCTTGGTCAACGAGGATGAAAATTGCTTTAGAAGCAGCCAAAGGCCTTCAATTCCTTCACGAAGCCGACCCACCTGTTATATTTAGAGATTTCAAAACCTCCAATATTCTTTTGGATTCTGATTATACAACAAAACTCTCAGATCTTGGATTGGCTAAAGACGGTGTCGATTGTGAAGACCAACCAGACATGTCTTGTATTATGGGAACTCAAGGTTATGCCGCTCCTGAATACGTCAAATATGGCCATTTGTCGACGATGAGTGACGTGTACAGCTACGGCGTCGTTTTACTAGAGCTACTGACGGGAAAGCCGTCAATGGACCGAAAGACTGGCGACTTTCTAGTGAATTGGGCCAAGCCACTTCTAAAGGACTCGAAACGCCTCTGCCGGATCATGGACCCAAGGCTCGAGGGCCTGTACTCGGCCGACGGCGCACGTAAGGCCGCTGCCTTAGCCCACAAATGCTTAAACCGCAACTCTAAGCGGCGGCCGCCTGTGACGGAAGTCGTTAACGTGTTGAAGTCTCTGCAGGACTTTAACGACGTCTTCACGGCGCCGTTTGTTTACGTGGTGGAGGAGGATTGCTGTGGGGAAGAGGAGAATAAGAGGAGAGACGAGAGAGTTATTGAAGGGAATGGGCTTGGGCTGGGTGGTTTGGGCCTGGGCCTGAATTGGAAAAATTGGAGGCCCATCTCTGTATGA 1245 48.92 MGMKRKMTWKSMIIPSCYTAVSEDDERRRFSKKGSSQRLSLSDASNPSSPLSIDDLSNSLVGPKLHIFSFAELRTITHNFASSNLLGEGGFGPVYKGFVDDKIKPGLEAQPVAVKLLDLDGSQGHKEWLAEIIILGQMRHQNLVKLIGYCWEEEYRLLVYEYMARGSLENQLFRKYSAALPWSTRMKIALEAAKGLQFLHEADPPVIFRDFKTSNILLDSDYTTKLSDLGLAKDGVDCEDQPDMSCIMGTQGYAAPEYVKYGHLSTMSDVYSYGVVLLELLTGKPSMDRKTGDFLVNWAKPLLKDSKRLCRIMDPRLEGLYSADGARKAAALAHKCLNRNSKRRPPVTEVVNVLKSLQDFNDVFTAPFVYVVEEDCCGEEENKRRDERVIEGNGLGLGGLGLGLNWKNWRPISV 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27790343 27792586 + ClCG05G015830.1 Cla05g01635 273125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01635 414 PANTHER OS01G0588500 PROTEIN-RELATED 26 387 - -
Cla05g01635 414 Gene3D Phosphorylase Kinase; domain 1 54 162 - -
Cla05g01635 414 Pfam Protein kinase domain 82 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01635 414 MobiDBLite consensus disorder prediction 35 50 - -
Cla05g01635 414 SUPERFAMILY Protein kinase-like (PK-like) 58 354 IPR011009 -
Cla05g01635 414 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Cla05g01635 414 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL12-RELATED 26 387 - -
Cla05g01635 414 MobiDBLite consensus disorder prediction 29 50 - -
Cla05g01635 414 ProSiteProfiles Protein kinase domain profile. 80 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01635 - - - csv:101218136 772.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01445 Cla-Chr3:30012403 Cla05g01635 Cla-Chr5:27790343 3.41E-161 dispersed
Cla05g01635 Cla-Chr5:27790343 Cla09g00094 Cla-Chr9:914110 1.19E-139 dispersed
Cla05g01635 Cla-Chr5:27790343 Cla11g00133 Cla-Chr11:1671135 1.23E-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000600 4 3 3 2 3 0 5 0 0 3 3 0 5 4 0 5 0 0 5 0 3 0 1 0 0 3 1 0 0 3 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80573 PF00069 Pkinase 1.20E-45 CL0016 Cla PK