Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01637 ATGAGATCAAGGAACAATGAAGCAACAATTCTCTGCGTGTTGGCGCGATTAGGAAACGGTATAATTACAAACCGGCAAAAACGCAACAGTTCAGATTCGATAACTCATTTCTTCGTCAGTGATTCTCCCGGGAGATTGTTGAAATTGAGCAGTGTCGACGCCGTAAAAATGGCACCCCTTGTGCGAGTTGCCGGGAGTATTCTCGTCCGCGATCGACTTCTCACGGCGGTTATCGCCGGAGCCTCCAGTCTTTCGTTCGTGGGATCGGGATTTATAGTGCTCTGTTACGTCCTCTTCAAAGAACTTCGCAAGTTCTCCTACAAGCTCGTCTTCTATCTTGCCCTATCCGATATGCTTTGCAGTTTCTTCACTATGATAGGGGATCCAGCAACAGGATTTTACTGTTATACTCAGGGCTATAGCACTCATTTCTTTTGTGTGGCATCGTTCTTGTGGACAACAACAATTGCATTCACCCTTCACCGTACTGTTGTTAGACATAAAACTGACGTCGAAGATTTGGAGGCTATGTTTCACTTGTATGTATGGGGAACATCATTAGTGTTGACTGTTATACGTTCTATTGGTAATAACCATGGACATGTGGGTACCTGGTGTTGGGCACAGTCAAGTCGTACAGGAAAGGCTGTTCACTTTATAACATTTTACATGCCACTCTGGGGTGCAATTCTCTACAATGGTATTACTTACCTTCAAGTGATACGCATGCTTAATAATGCTACCCGTATGGCAGTTGGCATCTCAGATAGGGCTTACCAGTCAGATGCAAGAGCAGACATGAAGGCTTTAAACAGATGGGGATATTATCCGCTCATCCTTATAGGGTCATGGGCTTTTGGTACAATCAACCGTATCCATGATTTTATTGAACCAGGTCATAAAATCTTTTGGCTGTCGGTTCTTGATGTTGGGATGGCTTCTCTGATGGGCTTGTTCAATTCAATAGCATATGGTCTTAATTCTTCAGTGCGACGGGCAATTTATGAAAGAATAGACCTCTACCACAACTATACTTCATTTGTATTTATCTATCGCTATAGTTGTGGTAGTCATGATCATGGAACTCTACTAAGGTTTTGGCCTGAGAAGCTTCGAAGATGGCTCCCCAGCAATTCAAGGTTCCGAAACCAACAACAAGAAGGCGAACTGGTGCCCTTGAAAAATCTGGATCAGCCATAG 1200 43.75 MRSRNNEATILCVLARLGNGIITNRQKRNSSDSITHFFVSDSPGRLLKLSSVDAVKMAPLVRVAGSILVRDRLLTAVIAGASSLSFVGSGFIVLCYVLFKELRKFSYKLVFYLALSDMLCSFFTMIGDPATGFYCYTQGYSTHFFCVASFLWTTTIAFTLHRTVVRHKTDVEDLEAMFHLYVWGTSLVLTVIRSIGNNHGHVGTWCWAQSSRTGKAVHFITFYMPLWGAILYNGITYLQVIRMLNNATRMAVGISDRAYQSDARADMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLSVLDVGMASLMGLFNSIAYGLNSSVRRAIYERIDLYHNYTSFVFIYRYSCGSHDHGTLLRFWPEKLRRWLPSNSRFRNQQQEGELVPLKNLDQP 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27807853 27819072 + ClCG05G015850.2 Cla05g01637 273127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01637 399 PANTHER TRANSMEMBRANE PROTEIN 116 72 387 - -
Cla05g01637 399 PANTHER G PROTEIN-COUPLED RECEPTOR 157-RELATED 72 387 - -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 107 129 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 74 89 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 137 150 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 227 250 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 270 291 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 152 170 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 318 334 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 300 317 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 214 226 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 175 190 IPR022340 -
Cla05g01637 399 PRINTS Putative plant GPCR, GCR1, signature 91 105 IPR022340 -
Cla05g01637 399 ProSiteProfiles G-protein coupled receptors family 2 profile 2. 74 328 IPR017981 GO:0004888|GO:0007166|GO:0016021
Cla05g01637 399 Pfam Slime mold cyclic AMP receptor 77 331 - -
Cla05g01637 399 SUPERFAMILY Family A G protein-coupled receptor-like 72 335 - -
Cla05g01637 399 PRINTS GCR1-cAMP receptor family signature 135 153 IPR022343 -
Cla05g01637 399 PRINTS GCR1-cAMP receptor family signature 85 103 IPR022343 -
Cla05g01637 399 PRINTS GCR1-cAMP receptor family signature 276 294 IPR022343 -
Cla05g01637 399 PRINTS GCR1-cAMP receptor family signature 104 119 IPR022343 -
Cla05g01637 399 PRINTS GCR1-cAMP receptor family signature 308 327 IPR022343 -
Cla05g01637 399 Gene3D - 71 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01637 K22987 GCR1, CRLA; cAMP receptor-like G-protein coupled receptor - csv:101216480 617.076
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g174 Blo01g01438 . Bda01g00644 . . Bpe02g00515 . Bma01g02189 . . Cma01g01606 . Car09g00321 . . . Cpe06g00265 . . . . . . . Cla05g01637 Cam05g1746 Cec05g1756 Cco05g1812 Clacu05g1738 Cmu05g1623 Cre05g1750 Cone4ag1705 Cone7ag1621 . . Lsi04g01377 . . . . . . . . . . . Sed13g1922 Cmo01g01688 Cmo09g00373 Cma09g00372 . Car01g01310 . . Cpe02g00297 Bhi09g03068 Tan01g3494 Cmetu07g1418 . . . . . . . . . . . . . . Cme07g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004383 1 3 1 1 1 1 3 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 6 1 42