Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01642 ATGCCTCTCATCAACGCCGCCGGCGCCGCCCACCGCCCTCACCAGTCATCTGCATCCCAATCACCTCAATTCCACATACCTACTACTGCCGCCGATGACGACGACGATCTTCTTCCTTCCACCCAGACAGTCCTTTCCTCGCGGTCTTCAACCTCGCAAAAACCCCTCGCGATCTCCGACTTATCCCTTCACATTCCCGCTCCCAAAAGGCCGAAACGTTCTGCCCCGACGGCCACTGGCAAGGAAAACGTTCCCTCTATAACACATCACGATGTTGGATTTAAGCCCAATTTTGGTAGACGTAATGGCGCTGCTGCTTTGGATGATGATGAGGTCTTCGGAGCGTCGGATATTGATTTAGGTTGCAGTTTGGATTTGATACAGCCGAGCATTGTGGGCTGCAGTTACGAAACTCGTGATGTAAACTCGGGAGAGGAGGTAGTTGATGGGGATGATGATTTTTCTGGTGCGATGGATGAAAGTAAGGGGTCGAAGGTAAAGGGGGGCTATCTGGTCAATTCGATTGAATCTAGGCTAGTGAATTCCAGAGTAGATTGCGATGTTGAGGTCAGTGGCAGTGATGGTTTTGAGTCGGATGCAGAGCTAGACTTGTTGCTCAATCTGCGTTCGCAACTGGATGAGGAAGACCGTATTAGTGGAGTGGGATTTGATACTGAGGAAACAGGTTTTCTAGTGGATGAAGAAGGTATGATTCAATGTCCTCTTTGTGGGGTTGATATTTCTGATCTTAGTGACGAGCAACGTCTTGTTCACACCAATGATTGTATTGACAAAGAGGACGCCCAAGCTCAAAATGCTGCTCTTACTTCTGATAAAAAGCAAACTTCAGGTCCTCAACAGTCTGGTGATAATTCCAGATTTTCAACTGTTCTCAAATGGTTGCATGATCTTGGTTTATCGAAATATGAAGACATTTTTGTAAGGGAGGAGATTGATTGGGACACGTTACAGTGGTTGACAGATGAGGATCTCAATAATATGGGTATCACTGCACTTGGCCCCCGAAGGAAGATCACACATGCTCTCTCTGAACTCAGAAAAGAATCATCTGCGGTTGAAACTTGCACGAATTCACATGCCCCTTCTGGTACAGGGCAACAGAGTAACAATGGTTCAGATGGGCGTGAAGGATCAATCAATGGAATTAATAGAACACCTGCGAACAAGTTGATCACTGATTATTTCCCAGGCTTTGCCACTAATAAGAAGAATGCATGCAGCATCATTAGTGGTCAGAAAGATGTGGGGAAAAAAATACCCGACTCTCTTCACAAAGGTAAAACTGCAAAAAGAAATGTAAGAAATGGGAAGCTTGGGAATGTTCCAGCCTGGAGTTGTATACCAGGGACACCATTTAGAGTGGATGCTTTTCGACATCTTAGAGGAGATTGTTTTCATTGGTTTCTTACTCACTTTCATATGGATCATTATCAAGGTCTGACAAAGTCATTTTGTCATGGAATGATTTATTGTTCTCCTATAACAGCAAAGCTAGTAAACATGAAGATTGGAATTCCATGGGAAAGGTTACAAGTTTTACCTCTCGACCAGAAAATTAACATTGCGGGAATAGATGTAACTTGTTTTGATGCTAATCATTGCCCTGGTTCAATAATCATACTCTTTGAACCACCTAATGGTAAGGCTGTTCTACATACAGGGGATTTCCGATTTTGTGAGCAAATGGGAAGCTTGTCGGTTTTTCAAACATGCCGTATCCATACCCTGATCCTTGATACCACTTATTGTGATCCACAGTATGATTTCCCAAAGCAGGAGACCGTTATACAATTTGTAATTGATGCCATTCAAGCTGAAGCTTTCAACCCAAAAACTCTTTTCCTGATTGGATGTTATACCATCGGAAAGGAACGACTTTTTTTGGAAGTTGCCCGTGTCCTGCGCAAGAAGGTGTATGTAACTGCAGCAAAGTTACGGATTTTGAAATGCTTGGGGTTCTCAGCGGAGGACATGCAGTGGTTTACAGTGAATGAACGGGAAAGCCACATACATGTCGTACCTCTGTGGACACTTGCGAGCTTCAAACGACTGAAGCATGTATCAAATCAATATGCAAATCGATTCAGTCTTATAGTTGCTTTCTCTCCTACCGGCTGGGCACTTTCAAAAGGAAAGAAGAAATCTCCTGGGAGAAGGTGGCAGCAAGGTACGATTATAAGATATGAAGTGCCATATAGTGAGCATAGCAGCTTCTCAGAACTGAAGGATTTTGTAAAGCTTGTATCTCCCGTAAACATAATACCAAGTGTGAATAATCATGGACCTGACTCAGCCCTTGCCATGACCTCGCTTTTGTCATCTTGA 2346 43.99 MPLINAAGAAHRPHQSSASQSPQFHIPTTAADDDDDLLPSTQTVLSSRSSTSQKPLAISDLSLHIPAPKRPKRSAPTATGKENVPSITHHDVGFKPNFGRRNGAAALDDDEVFGASDIDLGCSLDLIQPSIVGCSYETRDVNSGEEVVDGDDDFSGAMDESKGSKVKGGYLVNSIESRLVNSRVDCDVEVSGSDGFESDAELDLLLNLRSQLDEEDRISGVGFDTEETGFLVDEEGMIQCPLCGVDISDLSDEQRLVHTNDCIDKEDAQAQNAALTSDKKQTSGPQQSGDNSRFSTVLKWLHDLGLSKYEDIFVREEIDWDTLQWLTDEDLNNMGITALGPRRKITHALSELRKESSAVETCTNSHAPSGTGQQSNNGSDGREGSINGINRTPANKLITDYFPGFATNKKNACSIISGQKDVGKKIPDSLHKGKTAKRNVRNGKLGNVPAWSCIPGTPFRVDAFRHLRGDCFHWFLTHFHMDHYQGLTKSFCHGMIYCSPITAKLVNMKIGIPWERLQVLPLDQKINIAGIDVTCFDANHCPGSIIILFEPPNGKAVLHTGDFRFCEQMGSLSVFQTCRIHTLILDTTYCDPQYDFPKQETVIQFVIDAIQAEAFNPKTLFLIGCYTIGKERLFLEVARVLRKKVYVTAAKLRILKCLGFSAEDMQWFTVNERESHIHVVPLWTLASFKRLKHVSNQYANRFSLIVAFSPTGWALSKGKKKSPGRRWQQGTIIRYEVPYSEHSSFSELKDFVKLVSPVNIIPSVNNHGPDSALAMTSLLSS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27860295 27868857 + ClCG05G015900.1 Cla05g01642 273132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01642 781 Gene3D - 288 365 IPR013761 -
Cla05g01642 781 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 238 778 - -
Cla05g01642 781 MobiDBLite consensus disorder prediction 35 58 - -
Cla05g01642 781 MobiDBLite consensus disorder prediction 356 391 - -
Cla05g01642 781 Pfam SAM domain (Sterile alpha motif) 291 353 IPR001660 GO:0005515
Cla05g01642 781 Gene3D - 595 742 - -
Cla05g01642 781 SUPERFAMILY Metallo-hydrolase/oxidoreductase 469 764 IPR036866 -
Cla05g01642 781 MobiDBLite consensus disorder prediction 355 391 - -
Cla05g01642 781 CDD SNM1A-1C-like_MBL-fold 436 592 - -
Cla05g01642 781 ProSiteProfiles SAM domain profile. 292 355 IPR001660 GO:0005515
Cla05g01642 781 SUPERFAMILY SAM/Pointed domain 290 354 IPR013761 -
Cla05g01642 781 MobiDBLite consensus disorder prediction 12 27 - -
Cla05g01642 781 SMART SAM_4 289 355 IPR001660 GO:0005515
Cla05g01642 781 MobiDBLite consensus disorder prediction 1 95 - -
Cla05g01642 781 Pfam DNA repair metallo-beta-lactamase 664 767 IPR011084 -
Cla05g01642 781 MobiDBLite consensus disorder prediction 273 292 - -
Cla05g01642 781 CDD SAM_superfamily 297 351 - -
Cla05g01642 781 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 238 778 - -
Cla05g01642 781 Gene3D - 454 764 IPR036866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01642 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - csv:101218609 1347.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00152 Cla-Chr2:1631133 Cla05g01642 Cla-Chr5:27860295 8.96E-32 dispersed
Cla05g01642 Cla-Chr5:27860295 Cla07g01571 Cla-Chr7:32905964 3.17E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34