Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01645 ATGTTTATGGCTGCTCGGATTGCCAATCCTTTGAAAGCCCTAATCTCGAATGAGTACAATGTGAATCCTTCTCGTCATTTCCAATTTTTGAACGAGTTCGCAAATTATCTATGCAGAAATCTGTTTGTGGAGTTATGGTCGTGGTCGCAAATCCGGTCGATGACAAGCAGTAGACGTGTTCAGGATAGAAGCCGCTTGAAGAGGGTGCATGATCTTGAAATAGCAACGGAAAAATGGAAGGTAGCTTACAAAGTACTCTTCTTGATTGAAACCCTCAAGCAAGAGCCTGAGATGGTAATTCCTGTTAGGAATTTAGAACAATATCGGAGACAATTCAATCTCCCGAAACCGCACAAGGTCTCGGACTTCATTCGAAAATCGCCTAAAGTGTTTGAATTATACAAGGATCAGAGGGGTGTATTGTGGTGTGGAATGACTAAACAAGCTGAAGATTTGGTGGAAGAGGGGGAGAAGATAATTGAACAACACGCTGATAAGGCTGCCGAGTATGTTACCAGGTTTTTGATGATGTCAGTGAATAAGCGGCTTCCAGTGGACAAAGTTGCTCATTTCAGAAGAGATTTTGGGCTCCCACTCGATTTTCAAACCAAATGGGTGAATGATTACCCTGAACTATTTAAGGTGGTGAAGTCTGAGGATGAATGTGAATATTTGGAGCTTGTTTCTTGGAATCCTGCTTGGGCTGTAACAGAGTTGGAGAGGAAGTTGATGGGTGTGACTGAGAGCACTGCCACTCATACCCCAGGTTTGCTTTCACTTCCTTTTCCAATGAAATTTCCTTCCAATTACAAGAAGATATATAGATATGGAGGGAAAATTGATCACTTCCAGAAGAGGTCTTATTTGTCTCCATATGCCGATGCAAGAGAGCTAAAAGCTGGCTCACTTGAATTTGATAAAAGGGCTGTTGCTGTTATGCACGAGTTGCTTAGCTTTACCATGGAGAAGAGACTTGTTACTGATCACCTTACCCACTTTAGGCGGGAACTTGTGATGCCTCAAAAGCTAATGAGACTTCTTTTGAAGCATATTGGGATATTCTATGTTTCAGAGAGGGGTAAAAGATTTAGTGTTTTCTTGACAGAAGCTTATGAAGGTCCGGAGTTGATTGATAAATGCCCTTTAGTTCTTTGGAAGGAGAAGGTATTGAGCCTTGTTGGTTATAGAGGAAAGAAAAAGAAGATTAAAACTTTCGACGACGTGTCTGAAATGGAGGAGGATAACAGTTCGGCTTTGCCTGAGCAGGATATGGAGGATACTGGTTCTTCAGAAGAAACTGCATTAGATGCCGTTACAGTTGACTTGGAAACTAGGAATCTTCTTAGTGGGTAG 1353 41.83 MFMAARIANPLKALISNEYNVNPSRHFQFLNEFANYLCRNLFVELWSWSQIRSMTSSRRVQDRSRLKRVHDLEIATEKWKVAYKVLFLIETLKQEPEMVIPVRNLEQYRRQFNLPKPHKVSDFIRKSPKVFELYKDQRGVLWCGMTKQAEDLVEEGEKIIEQHADKAAEYVTRFLMMSVNKRLPVDKVAHFRRDFGLPLDFQTKWVNDYPELFKVVKSEDECEYLELVSWNPAWAVTELERKLMGVTESTATHTPGLLSLPFPMKFPSNYKKIYRYGGKIDHFQKRSYLSPYADARELKAGSLEFDKRAVAVMHELLSFTMEKRLVTDHLTHFRRELVMPQKLMRLLLKHIGIFYVSERGKRFSVFLTEAYEGPELIDKCPLVLWKEKVLSLVGYRGKKKKIKTFDDVSEMEEDNSSALPEQDMEDTGSSEETALDAVTVDLETRNLLSG 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27914947 27916299 + ClCG05G015930.1 Cla05g01645 273135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01645 450 PANTHER EXPRESSED PROTEIN 41 432 - -
Cla05g01645 450 Pfam Plant organelle RNA recognition domain 67 396 IPR021099 GO:0003723
Cla05g01645 450 MobiDBLite consensus disorder prediction 406 435 - -
Cla05g01645 450 MobiDBLite consensus disorder prediction 411 430 - -
Cla05g01645 450 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 41 432 IPR045040 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01645 - - - csv:101219084 775.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01189 Cla-Chr1:21571301 Cla05g01645 Cla-Chr5:27914947 8.83E-51 dispersed
Cla05g01645 Cla-Chr5:27914947 Cla09g00295 Cla-Chr9:2847825 0 dispersed
Cla05g01645 Cla-Chr5:27914947 Cla09g00635 Cla-Chr9:5988987 1.39E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g685 Blo01g01433 . Bda01g00646 . . Bpe02g00517 . . . . . . Car09g00329 . . . Cpe06g00269 . . . . . . . Cla05g01645 Cam05g1756 Cec05g1763 Cco05g1819 Clacu05g1745 Cmu05g1630 Cre05g1759 . . . . Lsi04g01371 . . . . . . . . . . . . . Cmo09g00381 Cma09g00379 . . . . . . . . . . . . . . . . . . . . . . Cme07g00161
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004384 1 3 3 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 43